Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
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.gitignore adding git ignore Jul 14, 2015
1.01_StringBasics.ipynb several fixes for consistency and for python 2 compatibility Jul 14, 2015
1.02_ManipulatingDNAStrings.ipynb fixing bug where strings weren't indexed in match loop Oct 9, 2015
1.03_ParsingRefGenome.ipynb several fixes for consistency and for python 2 compatibility Jul 14, 2015
1.04_WorkingWithSequencingReads.ipynb several fixes for consistency and for python 2 compatibility Jul 14, 2015
1.05_AnalyzingReadsByPosition.ipynb removed empty lines for easier copy paste Aug 23, 2015
1.06_NaiveExactMatching-MatchingArtificialReads.ipynb removed empty line for easier copy paste Aug 23, 2015
1.07_NaiveExactMatching-MatchingRealReads.ipynb removed empty line for easier copy paste Aug 23, 2015
2.01_BoyerMoore.ipynb removed some blank lines, added some indenting that should help with … Aug 23, 2015
2.02_SubstringIndex.ipynb several fixes for consistency and for python 2 compatibility Jul 14, 2015
2.03_ApproximateMatching.ipynb adjusted whitespace for easier copy paste Aug 23, 2015
3.01_EditDistanceDP.ipynb removed whitespace for easier copy paste Aug 23, 2015
3.02_GlobalAlignment.ipynb make sure column iterator is j Jul 24, 2015
3.03_FindingOverlaps.ipynb fixing typo Aug 23, 2015
3.04_FindingAllOverlaps.ipynb several fixes for consistency and for python 2 compatibility Jul 14, 2015
4.01_ShortestCommonSuperstring.ipynb fixing typo Aug 23, 2015
4.02_GreedySCS.ipynb fixing typo Aug 23, 2015
4.03_DeBruijn.ipynb several fixes for consistency and for python 2 compatibility Jul 14, 2015
README.md Initial commit Jul 7, 2015

README.md

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing