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| #ifndef BOWTIE_INDEX_TYPES_H | |
| #define BOWTIE_INDEX_TYPES_H | |
| #ifdef BOWTIE_64BIT_INDEX | |
| #define OFF_MASK 0xffffffffffffffff | |
| #define OFF_LEN_MASK 0xc000000000000000 | |
| #define LS_SIZE 0x100000000000000 | |
| #define OFF_SIZE 8 | |
| #define CACHE_WRAPPER_BIT 0x8000000000000000 | |
| typedef uint64_t TIndexOffU; | |
| typedef int64_t TIndexOff; | |
| #else | |
| #define OFF_MASK 0xffffffff | |
| #define OFF_LEN_MASK 0xc0000000 | |
| #define LS_SIZE 0x10000000 | |
| #define OFF_SIZE 4 | |
| #define CACHE_WRAPPER_BIT 0x80000000 | |
| typedef uint32_t TIndexOffU; | |
| typedef int TIndexOff; | |
| #endif /* BOWTIE_64BIT_INDEX */ | |
| extern const std::string gEbwt_ext; | |
| #endif /* BOWTIE_INDEX_TYPES_H */ | |