From 1205101d8ac2725963a8b585dbf7490fab904b90 Mon Sep 17 00:00:00 2001 From: Rone Charles Date: Tue, 6 Jun 2017 18:22:56 -0400 Subject: [PATCH] Remove support for inflating gzipped files --- bowtie | 10 +++------- 1 file changed, 3 insertions(+), 7 deletions(-) diff --git a/bowtie b/bowtie index fd25bd4..da4a1bd 100755 --- a/bowtie +++ b/bowtie @@ -28,15 +28,11 @@ def main(): for i, arg in enumerate(sys.argv[1:]): if arg.startswith('-'): continue - if arg.lower().endswith(('.gz', '.Z', '.bz', '.bz2')): + if arg.lower().endswith(('.bz', '.bz2')): basename, ext = os.path.splitext(arg.lower()) out_file = open(basename, 'wb') - if ext in ('.gz', '.z'): - import gzip - out_file.write(gzip.open(arg, 'rb').read()) - elif ext in ('.bz2', '.bz'): - import bz2 - out_file.write(bz2.BZ2File(arg).read()) + import bz2 + out_file.write(bz2.BZ2File(arg).read()) out_file.close() sys.argv[i+1] = basename