Bowtie cannot be killed on MacOS #40

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jcrbloch opened this Issue Jan 22, 2017 · 1 comment

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I am running bowtie2.2.9 on MacOS 10.12.2. I wanted to abort the program, which was running in the background, but there was no way to do so. I tried to "Quit" and "Force Quit" through the task manager but the program kept running. Then I tried kill -9 and kill -15 in the terminal window, but the program still kept running at 100% CPU usage. The only way to stop the program was to reboot my machine. I have never seen this with any program. Does anyone knows the problem?

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BenLangmead commented Apr 25, 2017

Can you provide the exact arguments you used to run Bowtie 2?

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