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Eliminate `--refout` #46
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ch4rr0
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by BenLangmead
Jun 1, 2017
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BenLangmead commentedApr 14, 2017
--refoutis not frequently used and overcomplicates the output code in Bowtie, especially as it relates to locking and batch output. I suggest we publicly deprecate it and remove it from the manual for the next release, then remove it entirely in the following release.