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Could not locate a Bowtie index corresponding to basename "genome" #57
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Were the two command lines ran in sequence? Is it possible that you did a |
pandafish123
commented
Jul 4, 2017
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Thanks for your reply. |
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pandafish123 commentedJul 3, 2017
Hi

Recently, i was using bowtie 1.2.1.1 to map fastq files to mouse genome. The following are my command lines.
bowtie-build --threads 10 Mus_musculus.GRCm38.dna_rm.toplevel.fa genome
nohup bowtie genome /data/disk4/chip/SRR3051599.fastq -S nibpl.sam -p 20 -m 1 &
However, i got error message "Could not locate a Bowtie index corresponding to basename "genome"
I do not know how to solve this problem.
Appreciate for your help