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BenLangmead/bowtie

Code Issues 18 Pull requests 7 Projects 0

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No reads processed from stdin in tab5 format when using --12 -
#51 by heuermh was closed Jun 16, 2017

1
Option To Exclude Unmapped Reads From SAM
#49 by DarioS was closed Jun 16, 2017

1
Elimiate -f for bowtie-build
#47 by DarioS was closed Apr 25, 2017

2
explanation for differences between bowtie-1.2-linux-legacy-x86_64.zip and bowtie-1.2-linux-x86_64.zip
#45 by ndaniel was closed Jun 16, 2017

3
Bowtie 1.2 error when using symlink
#44 by egaffo was closed Jun 16, 2017

3
bowtie will not stop when mutlithreading is enabled
#41 by fplaza was closed Jun 16, 2017

8
Bowtie 1.2 incorrect link
#39 by yesimon was closed Jan 17, 2017

1
Wont read fastq file from STDIN in v1.2.0
#37 by ppericard was closed Feb 8, 2017

2
Bowtie 1.2 tutorial "No such file or directory"
#36 by benjab01 was closed Feb 8, 2017

2
Formatting issues in Bowtie manual
#33 by BenLangmead was closed Mar 9, 2017
Add Support for gzipped FASTQ Files
#31 by DarioS was closed Jun 16, 2017

6
Bowtie default and --al outputs
#29 by JaneMerlevede was closed Feb 17, 2017
Error while writing string output
#27 by sackio was closed Mar 22, 2016

1
bowtie map files in binary format
#26 by keoughkath was closed Nov 1, 2016

1
Trying to run bowtie source files
#24 by AgazW was closed Feb 12, 2016

1
bowtie_inspect.cpp:197: bad delete ?
#20 by dcb314 was closed Jan 11, 2016

1
Interleaved fastq support
#16 by Jirapong was closed Jun 16, 2017

4
simple_tests.pl fails on Mac OS Yosemite
#14 by sjackman was closed Jun 17, 2015

1
small bug in bowtie script affecting identification of large indexes
#12 by pdblood was closed Jun 18, 2015

1
Makefile `install` target
#11 by wookietreiber was closed Jun 17, 2015

5
CasFinder specificity filter is not working
#10 by Nureke1286 was closed Aug 10, 2015

1
How to use Windows binaries
#9 by rmzelle was closed Aug 17, 2014

1
invalid fastq files produced using --un
#8 by bwlang was closed Jun 18, 2015

1
Add support for named pipes / process substitution
#2 by nathanweeks was closed Jun 18, 2015

2

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