Skip to content

Features
Business
Explore
Marketplace
Pricing

This repository

Sign in or Sign up

Watch 26
Star 150
Fork 51

BenLangmead/bowtie

Code Issues 18 Pull requests 7 Projects 0

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Pick a username

Email Address

Password

Already on GitHub? Sign in to your account

Labels Milestones

Clear current search query, filters, and sorts

18 Open 24 Closed

Filter by author

Filter by label

Filter by project

Filter by milestone

Filter by who’s assigned

Sort by

Least commented

Recently updated

Least recently updated

Most reactions

Crash when built with clang
#21 opened Jan 22, 2016 by outpaddling
pending difficulty with finding long index
#28 opened Jun 7, 2016 by gbottu

3
License
#30 opened Jul 20, 2016 by serge2016

2
Incorrect results when using large index
#35 opened Nov 2, 2016 by mluypaert

7
Bowtie-1.2 will not compile with Intel
#38 opened Jan 15, 2017 by mjarsulic

9
Bowtie cannot be killed on MacOS
#40 opened Jan 22, 2017 by jcrbloch

1
problem with fastq input
#43 opened Mar 6, 2017 by jchenpku

2
Eliminate `--refout`
#46 opened Apr 14, 2017 by BenLangmead
Reads Can Map Entirely Beyond Reference Sequence End
#48 opened Apr 24, 2017 by DarioS

7
Do fast bowtie with option -c
#50 opened May 10, 2017 by OrsonMM

1
Version 1.2 Causes Improperly Paired Alignments Error in RSEM
#52 opened May 29, 2017 by DarioS
misbehavior of --un parameter when more than 1 core is used
#53 opened Jun 10, 2017 by germaximus
corrupted MAP output is sometime generated by bowtie 1.2.1
#54 opened Jun 13, 2017 by ndaniel

6
wrong report of reads processed when "-k" is used in Bowtie 1.2.1.1
#55 opened Jun 16, 2017 by ndaniel

2
Error: Could not allocate ChunkPool of ... bytes
#56 opened Jun 24, 2017 by meecle

1
Could not locate a Bowtie index corresponding to basename "genome"
#57 opened Jul 3, 2017 by pandafish123

2
bowtie 1.2.1.1 --strata reports all valid alignments instead of best stratum
#58 opened Jul 5, 2017 by ceiabreu
Failure to truncate R2 read names with spaces
#59 opened Jul 13, 2017 by brisk022

ProTip! Exclude everything labeled bug with -label:bug.

Contact GitHub
API
Training
Shop
Blog
About

© 2017 GitHub, Inc.
Terms
Privacy
Security
Status
Help

You can't perform that action at this time.

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session.