{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":7263010,"defaultBranch":"master","name":"bowtie2","ownerLogin":"BenLangmead","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2012-12-20T19:25:11.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/3075483?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1715916387.0","currentOid":""},"activityList":{"items":[{"before":"4b537b17f00936db9797d3f6c30e21080d3adecf","after":"4cf8d526f4b7ec6519a79ed4c6f826caf09e0bba","ref":"refs/heads/master","pushedAt":"2024-05-17T02:58:05.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Update release date","shortMessageHtmlLink":"Update release date"}},{"before":"51edd7176d0732bd963b6a9b04f9fa0ec39bd559","after":"4cf8d526f4b7ec6519a79ed4c6f826caf09e0bba","ref":"refs/heads/bug_fixes","pushedAt":"2024-05-17T02:57:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Update release date","shortMessageHtmlLink":"Update release date"}},{"before":"670e6910e176b60ba8fb5cc41bf83175cfc10feb","after":"51edd7176d0732bd963b6a9b04f9fa0ec39bd559","ref":"refs/heads/bug_fixes","pushedAt":"2024-05-15T15:49:23.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Merge branch 'master' into bug_fixes","shortMessageHtmlLink":"Merge branch 'master' into bug_fixes"}},{"before":"592f1636516d7c4fab8456f6fd5998200df0ba65","after":"670e6910e176b60ba8fb5cc41bf83175cfc10feb","ref":"refs/heads/bug_fixes","pushedAt":"2024-05-15T15:48:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Update documentation in preparation for release of v2.5.4","shortMessageHtmlLink":"Update documentation in preparation for release of v2.5.4"}},{"before":"a43fa6f43f54989468a294967898f85b9fe4cefa","after":"4b537b17f00936db9797d3f6c30e21080d3adecf","ref":"refs/heads/master","pushedAt":"2024-05-09T15:56:53.000Z","pushType":"push","commitsCount":13,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Rearrange indexes in sidebar","shortMessageHtmlLink":"Rearrange indexes in sidebar"}},{"before":"42281d779b34602f1b4c24c6926aa84fa20201ad","after":"592f1636516d7c4fab8456f6fd5998200df0ba65","ref":"refs/heads/bug_fixes","pushedAt":"2024-05-08T17:36:26.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Add announcement for new indexes","shortMessageHtmlLink":"Add announcement for new indexes"}},{"before":"b22247b4f5d612c9a0e652897985debec35e7d9e","after":"42281d779b34602f1b4c24c6926aa84fa20201ad","ref":"refs/heads/bug_fixes","pushedAt":"2024-05-07T17:03:21.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Print the last successful mate parsed if mismatch in number of paired-end reads","shortMessageHtmlLink":"Print the last successful mate parsed if mismatch in number of paired…"}},{"before":"89c86d71bb0b2ff65c3cc3e6dceabd818a6c4b93","after":"b22247b4f5d612c9a0e652897985debec35e7d9e","ref":"refs/heads/bug_fixes","pushedAt":"2024-04-26T01:52:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Setup BWT output streams to throw an exception if error occurs during writing","shortMessageHtmlLink":"Setup BWT output streams to throw an exception if error occurs during…"}},{"before":"8c76c44d87eff99cd34f43ba53d8655f9400f767","after":"89c86d71bb0b2ff65c3cc3e6dceabd818a6c4b93","ref":"refs/heads/bug_fixes","pushedAt":"2024-04-26T01:11:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Fix simple test failures","shortMessageHtmlLink":"Fix simple test failures"}},{"before":"213bfb8279d7c403b9bd3dfcf12b7f010c83acd9","after":"8c76c44d87eff99cd34f43ba53d8655f9400f767","ref":"refs/heads/bug_fixes","pushedAt":"2024-04-24T15:28:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Fix potential for overflow during tokenization","shortMessageHtmlLink":"Fix potential for overflow during tokenization"}},{"before":"f08f26f8885f9cbf39f967b51f26de47c201f4da","after":"213bfb8279d7c403b9bd3dfcf12b7f010c83acd9","ref":"refs/heads/bug_fixes","pushedAt":"2024-04-24T14:59:34.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Add support for toggling SAM Opt flags from the command line","shortMessageHtmlLink":"Add support for toggling SAM Opt flags from the command line"}},{"before":"2c9115520ce3605c39f42a185557538c0af51f49","after":"f08f26f8885f9cbf39f967b51f26de47c201f4da","ref":"refs/heads/bug_fixes","pushedAt":"2024-04-21T18:45:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Allow bowtie2 to continue trying after partial writes, use perror for write errors for better debugging","shortMessageHtmlLink":"Allow bowtie2 to continue trying after partial writes, use perror for…"}},{"before":"a43fa6f43f54989468a294967898f85b9fe4cefa","after":"2c9115520ce3605c39f42a185557538c0af51f49","ref":"refs/heads/bug_fixes","pushedAt":"2024-02-27T19:00:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Potential fix for memory leaks when processing BAM files","shortMessageHtmlLink":"Potential fix for memory leaks when processing BAM files"}},{"before":"04ec2d46ed816e45381404e9ce0e1e787b34d152","after":"a43fa6f43f54989468a294967898f85b9fe4cefa","ref":"refs/heads/master","pushedAt":"2024-01-17T02:35:01.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Remove whitespace character preventing the removal -lrt from LDLIBS","shortMessageHtmlLink":"Remove whitespace character preventing the removal -lrt from LDLIBS"}},{"before":"5da112226f57d68108e9c8d8d155bd0bd7f6c7f7","after":"a43fa6f43f54989468a294967898f85b9fe4cefa","ref":"refs/heads/bug_fixes","pushedAt":"2024-01-17T00:02:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Remove whitespace character preventing the removal -lrt from LDLIBS","shortMessageHtmlLink":"Remove whitespace character preventing the removal -lrt from LDLIBS"}},{"before":"760671bf2384735cfdb5bfd89c95da9e6389790d","after":"5da112226f57d68108e9c8d8d155bd0bd7f6c7f7","ref":"refs/heads/bug_fixes","pushedAt":"2024-01-16T16:42:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Disable warnings for variables that are set but unused","shortMessageHtmlLink":"Disable warnings for variables that are set but unused"}},{"before":"ca873ed32049ba1c1bd95cff3421221aa27b1edf","after":"760671bf2384735cfdb5bfd89c95da9e6389790d","ref":"refs/heads/bug_fixes","pushedAt":"2024-01-11T12:08:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Remove librt when cross-compiling Windows on Linux","shortMessageHtmlLink":"Remove librt when cross-compiling Windows on Linux"}},{"before":"36e1be0f58126571a442d328c2a5692a8856aa75","after":"ca873ed32049ba1c1bd95cff3421221aa27b1edf","ref":"refs/heads/bug_fixes","pushedAt":"2024-01-10T23:48:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Undo change that removed libdl from SRA-enabled builds","shortMessageHtmlLink":"Undo change that removed libdl from SRA-enabled builds"}},{"before":"a7c6d5dbd0b42207cf6a701149bdebcf21ef45ca","after":"36e1be0f58126571a442d328c2a5692a8856aa75","ref":"refs/heads/bug_fixes","pushedAt":"2024-01-10T17:37:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Update documentation in preparation for release 2.5.3","shortMessageHtmlLink":"Update documentation in preparation for release 2.5.3"}},{"before":"99eba20a9ac1a199aba8971fb06b42982b8cec8a","after":"a7c6d5dbd0b42207cf6a701149bdebcf21ef45ca","ref":"refs/heads/bug_fixes","pushedAt":"2024-01-09T15:20:01.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Add CMake support for building bowtie2 with libsais","shortMessageHtmlLink":"Add CMake support for building bowtie2 with libsais"}},{"before":"47f09b547a378dcdebb2e9b8db89f9207a8346a6","after":"99eba20a9ac1a199aba8971fb06b42982b8cec8a","ref":"refs/heads/bug_fixes","pushedAt":"2024-01-04T15:45:09.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Add documentation for building with libsais","shortMessageHtmlLink":"Add documentation for building with libsais"}},{"before":"7b256313236a82895c7ea3e19fef46a8087321c5","after":"47f09b547a378dcdebb2e9b8db89f9207a8346a6","ref":"refs/heads/bug_fixes","pushedAt":"2023-12-10T18:46:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Fix mutually exclusive error when specifying -F together with -f; update documention for FASTA-continuous","shortMessageHtmlLink":"Fix mutually exclusive error when specifying -F together with -f; upd…"}},{"before":"b6bdafe567a09319e5ffc05feba2e29af2396df0","after":"7b256313236a82895c7ea3e19fef46a8087321c5","ref":"refs/heads/bug_fixes","pushedAt":"2023-11-17T17:55:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Reduce the max buffer size from 16GB to 16MB","shortMessageHtmlLink":"Reduce the max buffer size from 16GB to 16MB"}},{"before":"d32e7349e4222e75e618ee9f817184279541c9d3","after":"b6bdafe567a09319e5ffc05feba2e29af2396df0","ref":"refs/heads/bug_fixes","pushedAt":"2023-11-10T17:31:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Add official support for libsais library","shortMessageHtmlLink":"Add official support for libsais library"}},{"before":"7be981a489bf3ab70d2e88400dbabf8cb0196038","after":"d32e7349e4222e75e618ee9f817184279541c9d3","ref":"refs/heads/bug_fixes","pushedAt":"2023-11-09T16:40:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Handle edge cases that would cause parser to behave inconsistenly","shortMessageHtmlLink":"Handle edge cases that would cause parser to behave inconsistenly"}},{"before":"04ec2d46ed816e45381404e9ce0e1e787b34d152","after":"7be981a489bf3ab70d2e88400dbabf8cb0196038","ref":"refs/heads/bug_fixes","pushedAt":"2023-11-08T17:31:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Fix issue when parsing empty FASTQ reads #451","shortMessageHtmlLink":"Fix issue when parsing empty FASTQ reads #451"}},{"before":"288f50d1791aeb7b41da2e405cb0ffcbdb916426","after":"04ec2d46ed816e45381404e9ce0e1e787b34d152","ref":"refs/heads/bug_fixes","pushedAt":"2023-10-13T23:21:30.000Z","pushType":"push","commitsCount":19,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Add more semi-colons","shortMessageHtmlLink":"Add more semi-colons"}},{"before":"1ac48c3c717585b0c47e5f3a32673ac1744045d6","after":"04ec2d46ed816e45381404e9ce0e1e787b34d152","ref":"refs/heads/master","pushedAt":"2023-10-13T23:20:36.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Add more semi-colons","shortMessageHtmlLink":"Add more semi-colons"}},{"before":"f62f2b4432efe1d77f889987bc71375d1ad6114c","after":"1ac48c3c717585b0c47e5f3a32673ac1744045d6","ref":"refs/heads/master","pushedAt":"2023-10-13T16:40:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Update version number on landing page","shortMessageHtmlLink":"Update version number on landing page"}},{"before":"521c3230af6c068d7d9f68264db0f01cfb5f0cbb","after":"f62f2b4432efe1d77f889987bc71375d1ad6114c","ref":"refs/heads/master","pushedAt":"2023-10-13T15:40:43.000Z","pushType":"push","commitsCount":28,"pusher":{"login":"ch4rr0","name":null,"path":"/ch4rr0","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22770906?s=80&v=4"},"commit":{"message":"Merge branch 'bug_fixes'","shortMessageHtmlLink":"Merge branch 'bug_fixes'"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAETHrYsAA","startCursor":null,"endCursor":null}},"title":"Activity · BenLangmead/bowtie2"}