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| Ben Langmead <langmea@cs.jhu.edu> wrote Bowtie 2, which is based partially on | |
| Bowtie. Bowtie was written by Ben Langmead and Cole Trapnell. | |
| Bowtie & Bowtie 2: http://bowtie-bio.sf.net | |
| A DLL from the pthreads for Win32 library is distributed with the Win32 version | |
| of Bowtie 2. The pthreads for Win32 library and the GnuWin32 package have many | |
| contributors (see their respective web sites). | |
| pthreads for Win32: http://sourceware.org/pthreads-win32 | |
| GnuWin32: http://gnuwin32.sf.net | |
| The ForkManager.pm perl module is used in Bowtie 2's random testing framework, | |
| and is included as scripts/sim/contrib/ForkManager.pm. ForkManager.pm is | |
| written by dLux (Szabo, Balazs), with contributions by others. See the perldoc | |
| in ForkManager.pm for the complete list. | |
| The file ls.h includes an implementation of the Larsson-Sadakane suffix sorting | |
| algorithm. The implementation is by N. Jesper Larsson and was adapted somewhat | |
| for use in Bowtie 2. | |
| TinyThreads is a portable thread implementation with a fairly compatible subset | |
| of C++11 thread management classes written by Marcus Geelnard. For more info | |
| check http://tinythreadpp.bitsnbites.eu/ | |
| Various users have kindly supplied patches, bug reports and feature requests | |
| over the years. Many, many thanks go to them. | |
| September 2011 |