diff --git a/NEWS b/NEWS index de7e1a6f..03506ba4 100644 --- a/NEWS +++ b/NEWS @@ -3,7 +3,7 @@ Bowtie 2 NEWS Bowtie 2 is now available for download from the project website, http://bowtie-bio.sf.net/bowtie2. 2.0.0-beta1 is the first version released to -the public and 2.3.1 is the latest version. Bowtie 2 is licensed under +the public and 2.3.2 is the latest version. Bowtie 2 is licensed under the GPLv3 license. See `LICENSE' file for details. Reporting Issues @@ -16,6 +16,27 @@ Please report any issues using the Sourceforge bug tracker: Version Release History ======================= +Version 2.3.2 - May 05, 2017 + * Added support for interleaved paired-end FASTQ inputs + (--interleaved) + * Now reports MREVERSE SAM flag for unaligned end when only one + end of a pair aligns + * Fixed issue where first character of some read names was + omitted from SAM output when using tabbed input formats + * Added --sam-no-qname-trunc option, which causes entire read + name, including spaces, to be written to SAM output. This + violates SAM specification, but can be useful in applications + that immediately postprocess the SAM. + * Fixed compilation error caused by pointer comparison issue + in aligner_result.cpp + * Removed termcap and readline dependencies introduced in v2.3.1 + * Fixed compilation issues caused by gzbuffer function when + compiling with zlib v1.2.3.5 and earlier. Users compiling against + these libraries will use the zlib default buffer size of 8Kb + when decompressing read files. + * Fixed issue that would cause Bowtie 2 hang when aligning FASTA + inputs with more than one thread + Version 2.3.1 - Mar 04, 2017 Please note that as of this release Bowtie 2 now has dependencies on zlib and readline libraries. Make sure that all dependencies are met before attempting to build from source. diff --git a/VERSION b/VERSION index 2bf1c1cc..f90b1afc 100644 --- a/VERSION +++ b/VERSION @@ -1 +1 @@ -2.3.1 +2.3.2 diff --git a/doc/website/manual.ssi b/doc/website/manual.ssi index 40dbb877..5891c956 100644 --- a/doc/website/manual.ssi +++ b/doc/website/manual.ssi @@ -1,5 +1,5 @@
Version 2.3.1
+Version 2.3.2
diff --git a/doc/website/recent_news.ssi b/doc/website/recent_news.ssi index 07103af5..8283835e 100644 --- a/doc/website/recent_news.ssi +++ b/doc/website/recent_news.ssi @@ -1,3 +1,14 @@ +Please note that as of this release Bowtie 2 now has dependencies on zlib and readline libraries. Make sure that all dependencies are met before attempting to build from source.