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Clarifies documentation of how to use --interleaved
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Merge branch 'mapq' into v2.3.2
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whups... sneaky
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…s than 1.2.3.5
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I had some trouble trying to do this sort of thing: ``` bowtie2 --interleaved -x /path/to/bowtie2_index/hg19 <all kind of stuff here -12, -1, -U ...> r1_r2_interleaved.fastq ``` but this works: ``` bowtie2 -x /path/to/bowtie2_index/hg19 --interleaved r1_r2_interleaved.fastq ``` This doc change describes what worked for me. I did not test tab5/6 files, but they may have the same usage
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…bbed inputs