Cloud-scale differential expression for RNA-seq
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R Added missing R package required in examples and updated the manual. Oct 3, 2013
contrib Initial SVN import Feb 21, 2011
doc Fixed typo for manual and website. Oct 17, 2013
emr/util Updated to push Bowtie binaries in case the version was updated Jun 29, 2012
example Updated the SRA for all examples. Oct 3, 2013
reftools Fixed the detection of an already present jar file for the examples. Oct 3, 2013
util Some changes in preparation for a working version of EMR mode Jun 26, 2013
webui Preparing myrna release. Oct 17, 2013
whirr Added some whirr instructions and a hadoop cluster configuration file. Jan 14, 2014
AWS.pm Adding the new key names Sep 22, 2013
Align.pl Some of my shell syntax stopped working on EMR, presumably becaues th… Sep 18, 2013
Assign.R Fixing a counter update that resulted in too many counter names Sep 19, 2013
Assign.pl Move the R exitlevel test to where it belongs Sep 27, 2013
CheckDirs.pl Fixing my incorrect solution to the mkpath problem. verbose => 0 actu… Aug 8, 2012
Copy.pl Made some counters verbose-only, with the --verbose-counters option Sep 17, 2013
Counters.pl Fixing my incorrect solution to the mkpath problem. verbose => 0 actu… Aug 8, 2012
Counters.pm Commented out unnecessary counter retrieval. Should fix problem for H… Jul 3, 2012
Get.pm Fixing bad shell redirects and adding an alternate fetch-dir function… Sep 22, 2013
LICENSE Initial SVN import Feb 21, 2011
MANUAL Fixed typo for manual and website. Oct 17, 2013
MANUAL.markdown Fixed typo for manual and website. Oct 17, 2013
Makefile Updated to bowtie v1.0.0. and updated the macos package names accordi… Jun 21, 2013
MapWrap.pl Fixing my incorrect solution to the mkpath problem. verbose => 0 actu… Aug 8, 2012
MyrnaIface.pm Fix an error reporting msg. Oct 23, 2013
NEWS Preparing myrna release. Oct 17, 2013
Normal.pl Made some counters verbose-only, with the --verbose-counters option Sep 17, 2013
Postprocess.R Initial SVN import Feb 21, 2011
PostprocessMap.pl Fixing my incorrect solution to the mkpath problem. verbose => 0 actu… Aug 8, 2012
PostprocessReduce.pl Fixed the copy command failure that makes hadoop abort. Oct 16, 2013
ReduceWrap.pl Fixing my incorrect solution to the mkpath problem. verbose => 0 actu… Aug 8, 2012
Stats.R Slight change to messages Jul 1, 2012
Stats.pl Some changes in preparation for a working version of EMR mode Jun 26, 2013
Summarize.pl Tighter control over use of ENV. Environment is now purged at the top… Jul 15, 2012
TOOLNAME Fixed issue whereby SRATOOLKIT_HOME was used instead of (tool name)_S… Apr 21, 2011
TUTORIAL Initial SVN import Feb 21, 2011
Tools.pm Added the hadoop version detection fix. Oct 23, 2013
Util.pm Fixed some open || die's to use parens properly Apr 21, 2011
VERSION Bumping version and adding NEWS Sep 27, 2013
Wrap.pm Initial SVN import Feb 21, 2011
myrna_emr Initial SVN import Feb 21, 2011
myrna_hadoop Initial SVN import Feb 21, 2011
myrna_local Initial SVN import Feb 21, 2011