Stepping Stone Simulator
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.gitignore
Barrier.cpp
Barrier.h
BootstrapResampler.cpp
BootstrapResampler.h
Coords.h
Event.cpp
Event.h
FreqTable.cpp
FreqTable.h
InterfaceBarrier.h
InternalLineage.cpp
InternalLineage.h
IslandSimulator.cpp
IslandSimulator.h
IsolationByDistance.cpp
IsolationByDistance.h
IsolationByDistanceBarrier.cpp
IsolationByDistanceBarrier.h
IsolationByDistanceExpansion.cpp
IsolationByDistanceExpansion.h
Lineage.cpp
Lineage.h
LineageTemplate.cpp
LineageTemplate.h
LocalLogisticGrowth.cpp
LocalLogisticGrowth.h
MigrationScheme.h
Parameters.cpp
Parameters.h
README.md
SEExpansion.cpp
SEExpansion.h
SEExpansionBarrier.cpp
SEExpansionBarrier.h
SEExpansionDiffK.cpp
SEExpansionDiffK.h
SEExpansionMultiOrigin.cpp
SEExpansionMultiOrigin.h
SFS.cpp
SFS.h
SNP.cpp
SNP.h
SNPTable.cpp
SNPTable.h
Sample.cpp
Sample.h
SequenceSimulator.cpp
SequenceSimulator.h
SimulationResults.cpp
SimulationResults.h
Simulator.cpp
Simulator.h
StartPos.cpp
StartPos.h
StatCalculator.cpp
StatCalculator.h
TerminalLineage.cpp
TerminalLineage.h
Tree.cpp
Tree.h
TreeSimulator.cpp
TreeSimulator.h
a_text_file.txt
compile.sh
doMatlab.py
doMatlabUW.py
edmonds.py
main.cpp
makefile
mscommand.sh
mscommand2.sh
runEdmonds.py
runSimsMalecot.sh
runSimsPalin.sh
runSimsTrump.sh
stupidDebugMakeFile
utils.cpp
utils.h

README.md

SSSim

Stepping Stone Simulator