Use preCICE version 3.3.0

.github/workflows/4-1-partitioned-oscillator.yml

@@ -31,7 +31,7 @@ jobs:
     defaults:
       run:
         working-directory: experiments/oscillator-overlap
-    container: precice/precice:3.2.0
+    container: precice/precice:3.3.0
     steps:
       - name: Checkout Repository
         uses: actions/checkout@v4
@@ -59,12 +59,12 @@ jobs:
           path: |
             # working directory is ignored by actions/upload-artifact
             experiments/oscillator-overlap/results
- 
+
   visualize:
     name: Create plots and tables to visualize experiments from Section 4.1
     needs: section_4_1
     runs-on: ubuntu-latest
-    container: 
+    container:
       image: benjaminrodenberg/latex:wi-paper
     steps:
       - name: Checkout Repository
@@ -117,7 +117,7 @@ jobs:
   publish-pages:
     permissions:
       contents: write
-    needs: 
+    needs:
       - merge
       - visualize
     runs-on: ubuntu-latest

.github/workflows/4-2-partitioned-heat-conduction.yml

@@ -33,7 +33,7 @@ jobs:
     defaults:
       run:
         working-directory: experiments/partitioned-heat-conduction
-    container: precice/precice:3.2.0
+    container: precice/precice:3.3.0
     steps:
       - name: Checkout Repository
         uses: actions/checkout@v4
@@ -80,7 +80,7 @@ jobs:
     defaults:
       run:
         working-directory: experiments/partitioned-heat-conduction
-    container: precice/precice:3.2.0
+    container: precice/precice:3.3.0
     steps:
       - name: Checkout Repository
         uses: actions/checkout@v4
@@ -112,11 +112,11 @@ jobs:
 
   visualize:
     name: Create plots to visualize experiments from Section 4.2
-    needs: 
+    needs:
       - section_4_2_partitioned
       - section_4_2_monolithic
     runs-on: ubuntu-latest
-    container: 
+    container:
       image: benjaminrodenberg/latex:wi-paper
     steps:
       - name: Checkout Repository
@@ -154,7 +154,7 @@ jobs:
   merge:
     name: Merge output artifacts
     runs-on: ubuntu-latest
-    needs: 
+    needs:
       - section_4_2_partitioned
       - section_4_2_monolithic
     steps:
@@ -166,7 +166,7 @@ jobs:
   publish-pages:
     permissions:
       contents: write
-    needs: 
+    needs:
       - merge
       - visualize
     runs-on: ubuntu-latest

.github/workflows/4-3-perpendicular-flap.yml

@@ -21,7 +21,7 @@ jobs:
         shell: bash
         working-directory: experiments/perpendicular-flap
     # built using tools/docker/fenics-openfoam/Dockerfile
-    container: benjaminrodenberg/fenics-openfoam:3.2.0
+    container: benjaminrodenberg/fenics-openfoam:3.3.0
     steps:
       - name: Checkout Repository
         uses: actions/checkout@v4
@@ -71,10 +71,10 @@ jobs:
 
   visualize:
     name: Create plots to visualize experiments from Section 4.3
-    needs: 
+    needs:
       - section_4_3
     runs-on: ubuntu-latest
-    container: 
+    container:
       image: benjaminrodenberg/latex:wi-paper
     steps:
       - name: Checkout Repository
@@ -122,7 +122,7 @@ jobs:
   publish-pages:
     permissions:
       contents: write
-    needs: 
+    needs:
       - merge
       - visualize
     runs-on: ubuntu-latest

.github/workflows/publish-docker.yml

@@ -4,7 +4,7 @@ on:
 
 jobs:
   build_precice_openfoam:
-    name: "Build preCICE 3.2.0 on top of opencfd/openfoam-dev:2412"
+    name: "Build preCICE 3.3.0 on top of opencfd/openfoam-dev:2412"
     runs-on: ubuntu-latest
     env:
         docker_username: benjaminrodenberg
@@ -21,7 +21,7 @@ jobs:
         with:
           push: true
           file: "./tools/docker/precice-openfoam/Dockerfile"
-          tags: ${{ env.docker_username }}/precice-openfoam:3.2.0  
+          tags: ${{ env.docker_username }}/precice-openfoam:3.3.0
   build_fenics_openfoam:
     name: "Build FEniCS-OpenFOAM"
     needs: build_precice_openfoam
@@ -41,4 +41,4 @@ jobs:
         with:
           push: true
           file: "./tools/docker/fenics-openfoam/Dockerfile"
-          tags: ${{ env.docker_username }}/fenics-openfoam:3.2.0
+          tags: ${{ env.docker_username }}/fenics-openfoam:3.3.0

experiments/README.md

@@ -20,8 +20,8 @@ In contrast to the preCICE distribution version v2404.0 a more recent version of
 
 ### preCICE components
 
-* preCICE [`3.2.0`](https://github.com/precice/precice/releases/tag/v3.2.0)
-* pyprecice [`3.2.1`](https://github.com/precice/python-bindings/releases/tag/v3.2.1) (automatically installed via `requirements.txt` of the respective case)
+* preCICE [`3.3.0`](https://github.com/precice/precice/releases/tag/v3.3.0)
+* pyprecice [`3.3.0`](https://github.com/precice/python-bindings/releases/tag/v3.3.0) (automatically installed via `requirements.txt` of the respective case)
 * FEniCS adapter [`2.2.0`](https://github.com/precice/fenics-adapter/releases/tag/v2.2.0) (automatically installed via `requirements.txt` of the respective case)
 * OpenFOAM adapter [`1.3.1`](https://github.com/precice/openfoam-adapter/releases/tag/v1.3.1)
 
@@ -37,11 +37,11 @@ In contrast to the preCICE distribution version v2404.0 a more recent version of
 
 The following steps will install the required dependencies:
 
-1. **preCICE**: Download the Debian package (`.deb`) of preCICE 3.2.0 from [here](https://github.com/precice/precice/releases/tag/v3.2.0) and install it on your system by running the command
+1. **preCICE**: Download the Debian package (`.deb`) of preCICE 3.3.0 from [here](https://github.com/precice/precice/releases/tag/v3.3.0) and install it on your system by running the command
 
    ```sh
-   wget https://github.com/precice/precice/releases/download/v3.2.0/libprecice3_3.2.0_noble.deb
-   sudo apt install -y libprecice3_3.2.0_noble.deb
+   wget https://github.com/precice/precice/releases/download/v3.3.0/libprecice3_3.3.0_noble.deb
+   sudo apt install -y libprecice3_3.3.0_noble.deb
    ```
 
    Note: The code name `noble` refers to Ubuntu 24.04, see [here](https://documentation.ubuntu.com/project/release-team/list-of-releases/). If you are using a different Ubuntu version, please replace `noble` with the respective code name.

plotting/oscillator-overlap/Fig10/data/constant.csv

@@ -1,8 +1,8 @@
-# participants version:{'Mass-Left': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/7/merge', 'chash': '4c031f00c705d9847942442c9c62ac413c142825'}, 'Mass-Right': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/7/merge', 'chash': '4c031f00c705d9847942442c9c62ac413c142825'}}
-# participants:{'Mass-Left': <prepesthel.participant.Participant object at 0x7f9b7e929bb0>, 'Mass-Right': <prepesthel.participant.Participant object at 0x7f9b7d830c20>}
-# run cmd:python3 doConvergenceStudy.py configs/precice-config-template-FP.xml --silent --executor Github --config configs/fig10_dts.csv -tss runge_kutta_4 generalized_alpha -wd 0 -o results/Fig10/data/constant.csv
-# args:Namespace(template_path='configs/precice-config-template-FP.xml', config='configs/fig10_dts.csv', silent=True, executor='Github', max_time=1.0, base_time_window_size=0.04, time_window_refinements=5, base_time_step_refinement=[1, 1], time_step_refinements=1, time_step_refinement_factor=[2, 2], time_stepping_scheme=['runge_kutta_4', 'generalized_alpha'], waveform_degree=0, exchange_substeps=False, out_filename='results/Fig10/data/constant.csv')
-# precice.get_version_information():b'3.2.0;no-info [git failed to run];PRECICE_FEATURE_MPI_COMMUNICATION=Y;PRECICE_FEATURE_PETSC_MAPPING=Y;PRECICE_FEATURE_GINKGO_MAPPING=N;PRECICE_FEATURE_PYTHON_ACTIONS=Y;PRECICE_BINDINGS_C=Y;PRECICE_BINDINGS_FORTRAN=Y;CXX=GNU;CXXFLAGS= -O3 -DNDEBUG;LDFLAGS='
+# participants version:{'Mass-Left': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/8/merge', 'chash': '3202eb513f485596bf76ab992ea7ac77fea1d47d'}, 'Mass-Right': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/8/merge', 'chash': '3202eb513f485596bf76ab992ea7ac77fea1d47d'}}
+# participants:{'Mass-Left': <prepesthel.participant.Participant object at 0x7f49c781a810>, 'Mass-Right': <prepesthel.participant.Participant object at 0x7f49c7708470>}
+# run cmd:python3 doConvergenceStudy.py precice-config-FP.xml.jinja2 --silent --executor Github --config configs/fig10_dts.csv -tss runge_kutta_4 generalized_alpha -wd 0 -o results/Fig10/data/constant.csv
+# args:Namespace(template_path='precice-config-FP.xml.jinja2', config='configs/fig10_dts.csv', silent=True, executor='Github', max_time=1.0, base_time_window_size=0.04, time_window_refinements=5, base_time_step_refinement=[1, 1], time_step_refinements=1, time_step_refinement_factor=[2, 2], time_stepping_scheme=['runge_kutta_4', 'generalized_alpha'], waveform_degree=0, exchange_substeps=False, out_filename='results/Fig10/data/constant.csv')
+# precice.get_version_information():b'3.3.0;no-info [git failed to run];PRECICE_FEATURE_MPI_COMMUNICATION=Y;PRECICE_FEATURE_PETSC_MAPPING=Y;PRECICE_FEATURE_GINKGO_MAPPING=N;PRECICE_FEATURE_PYTHON_ACTIONS=Y;PRECICE_BINDINGS_C=Y;PRECICE_BINDINGS_FORTRAN=Y;CXX=GNU;CXXFLAGS= -O3 -DNDEBUG;LDFLAGS='
 # precice.__version__:3.2.1
 # precice_config_params:{'time_window_size': 0.0125, 'max_time': 1.0, 'waveform_degree': 0, 'substeps': False}
 time window size,time step size Mass-Left,time step size Mass-Right,error Mass-Left,error Mass-Right

plotting/oscillator-overlap/Fig10/data/linear.csv

@@ -1,8 +1,8 @@
-# participants version:{'Mass-Left': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/7/merge', 'chash': '4c031f00c705d9847942442c9c62ac413c142825'}, 'Mass-Right': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/7/merge', 'chash': '4c031f00c705d9847942442c9c62ac413c142825'}}
-# participants:{'Mass-Left': <prepesthel.participant.Participant object at 0x7fbb33b6c5c0>, 'Mass-Right': <prepesthel.participant.Participant object at 0x7fbb33b6c620>}
-# run cmd:python3 doConvergenceStudy.py configs/precice-config-template-FP.xml --silent --executor Github --config configs/fig10_dts.csv -tss runge_kutta_4 generalized_alpha -wd 1 -o results/Fig10/data/linear.csv
-# args:Namespace(template_path='configs/precice-config-template-FP.xml', config='configs/fig10_dts.csv', silent=True, executor='Github', max_time=1.0, base_time_window_size=0.04, time_window_refinements=5, base_time_step_refinement=[1, 1], time_step_refinements=1, time_step_refinement_factor=[2, 2], time_stepping_scheme=['runge_kutta_4', 'generalized_alpha'], waveform_degree=1, exchange_substeps=False, out_filename='results/Fig10/data/linear.csv')
-# precice.get_version_information():b'3.2.0;no-info [git failed to run];PRECICE_FEATURE_MPI_COMMUNICATION=Y;PRECICE_FEATURE_PETSC_MAPPING=Y;PRECICE_FEATURE_GINKGO_MAPPING=N;PRECICE_FEATURE_PYTHON_ACTIONS=Y;PRECICE_BINDINGS_C=Y;PRECICE_BINDINGS_FORTRAN=Y;CXX=GNU;CXXFLAGS= -O3 -DNDEBUG;LDFLAGS='
+# participants version:{'Mass-Left': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/8/merge', 'chash': '3202eb513f485596bf76ab992ea7ac77fea1d47d'}, 'Mass-Right': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/8/merge', 'chash': '3202eb513f485596bf76ab992ea7ac77fea1d47d'}}
+# participants:{'Mass-Left': <prepesthel.participant.Participant object at 0x7f86d1e98860>, 'Mass-Right': <prepesthel.participant.Participant object at 0x7f86cf610860>}
+# run cmd:python3 doConvergenceStudy.py precice-config-FP.xml.jinja2 --silent --executor Github --config configs/fig10_dts.csv -tss runge_kutta_4 generalized_alpha -wd 1 -o results/Fig10/data/linear.csv
+# args:Namespace(template_path='precice-config-FP.xml.jinja2', config='configs/fig10_dts.csv', silent=True, executor='Github', max_time=1.0, base_time_window_size=0.04, time_window_refinements=5, base_time_step_refinement=[1, 1], time_step_refinements=1, time_step_refinement_factor=[2, 2], time_stepping_scheme=['runge_kutta_4', 'generalized_alpha'], waveform_degree=1, exchange_substeps=False, out_filename='results/Fig10/data/linear.csv')
+# precice.get_version_information():b'3.3.0;no-info [git failed to run];PRECICE_FEATURE_MPI_COMMUNICATION=Y;PRECICE_FEATURE_PETSC_MAPPING=Y;PRECICE_FEATURE_GINKGO_MAPPING=N;PRECICE_FEATURE_PYTHON_ACTIONS=Y;PRECICE_BINDINGS_C=Y;PRECICE_BINDINGS_FORTRAN=Y;CXX=GNU;CXXFLAGS= -O3 -DNDEBUG;LDFLAGS='
 # precice.__version__:3.2.1
 # precice_config_params:{'time_window_size': 0.0125, 'max_time': 1.0, 'waveform_degree': 1, 'substeps': False}
 time window size,time step size Mass-Left,time step size Mass-Right,error Mass-Left,error Mass-Right

plotting/oscillator-overlap/Fig10/data/piecewise_linear.csv

@@ -1,8 +1,8 @@
-# participants version:{'Mass-Left': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/7/merge', 'chash': '4c031f00c705d9847942442c9c62ac413c142825'}, 'Mass-Right': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/7/merge', 'chash': '4c031f00c705d9847942442c9c62ac413c142825'}}
-# participants:{'Mass-Left': <prepesthel.participant.Participant object at 0x7f758bab6510>, 'Mass-Right': <prepesthel.participant.Participant object at 0x7f75892908f0>}
-# run cmd:python3 doConvergenceStudy.py configs/precice-config-template-FP.xml --silent --executor Github --config configs/fig10_dts.csv -tss runge_kutta_4 generalized_alpha -wd 1 --exchange-substeps -o results/Fig10/data/piecewise_linear.csv
-# args:Namespace(template_path='configs/precice-config-template-FP.xml', config='configs/fig10_dts.csv', silent=True, executor='Github', max_time=1.0, base_time_window_size=0.04, time_window_refinements=5, base_time_step_refinement=[1, 1], time_step_refinements=1, time_step_refinement_factor=[2, 2], time_stepping_scheme=['runge_kutta_4', 'generalized_alpha'], waveform_degree=1, exchange_substeps=True, out_filename='results/Fig10/data/piecewise_linear.csv')
-# precice.get_version_information():b'3.2.0;no-info [git failed to run];PRECICE_FEATURE_MPI_COMMUNICATION=Y;PRECICE_FEATURE_PETSC_MAPPING=Y;PRECICE_FEATURE_GINKGO_MAPPING=N;PRECICE_FEATURE_PYTHON_ACTIONS=Y;PRECICE_BINDINGS_C=Y;PRECICE_BINDINGS_FORTRAN=Y;CXX=GNU;CXXFLAGS= -O3 -DNDEBUG;LDFLAGS='
+# participants version:{'Mass-Left': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/8/merge', 'chash': '3202eb513f485596bf76ab992ea7ac77fea1d47d'}, 'Mass-Right': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/8/merge', 'chash': '3202eb513f485596bf76ab992ea7ac77fea1d47d'}}
+# participants:{'Mass-Left': <prepesthel.participant.Participant object at 0x7f326a8e7ec0>, 'Mass-Right': <prepesthel.participant.Participant object at 0x7f326a8e7fe0>}
+# run cmd:python3 doConvergenceStudy.py precice-config-FP.xml.jinja2 --silent --executor Github --config configs/fig10_dts.csv -tss runge_kutta_4 generalized_alpha -wd 1 --exchange-substeps -o results/Fig10/data/piecewise_linear.csv
+# args:Namespace(template_path='precice-config-FP.xml.jinja2', config='configs/fig10_dts.csv', silent=True, executor='Github', max_time=1.0, base_time_window_size=0.04, time_window_refinements=5, base_time_step_refinement=[1, 1], time_step_refinements=1, time_step_refinement_factor=[2, 2], time_stepping_scheme=['runge_kutta_4', 'generalized_alpha'], waveform_degree=1, exchange_substeps=True, out_filename='results/Fig10/data/piecewise_linear.csv')
+# precice.get_version_information():b'3.3.0;no-info [git failed to run];PRECICE_FEATURE_MPI_COMMUNICATION=Y;PRECICE_FEATURE_PETSC_MAPPING=Y;PRECICE_FEATURE_GINKGO_MAPPING=N;PRECICE_FEATURE_PYTHON_ACTIONS=Y;PRECICE_BINDINGS_C=Y;PRECICE_BINDINGS_FORTRAN=Y;CXX=GNU;CXXFLAGS= -O3 -DNDEBUG;LDFLAGS='
 # precice.__version__:3.2.1
 # precice_config_params:{'time_window_size': 0.0125, 'max_time': 1.0, 'waveform_degree': 1, 'substeps': True}
 time window size,time step size Mass-Left,time step size Mass-Right,error Mass-Left,error Mass-Right

plotting/oscillator-overlap/Fig10/data/third_degree_b-spline.csv

@@ -1,8 +1,8 @@
-# participants version:{'Mass-Left': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/7/merge', 'chash': '4c031f00c705d9847942442c9c62ac413c142825'}, 'Mass-Right': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/7/merge', 'chash': '4c031f00c705d9847942442c9c62ac413c142825'}}
-# participants:{'Mass-Left': <prepesthel.participant.Participant object at 0x7fcdea1f0c20>, 'Mass-Right': <prepesthel.participant.Participant object at 0x7fcdead4b350>}
-# run cmd:python3 doConvergenceStudy.py configs/precice-config-template-FP.xml --silent --executor Github --config configs/fig10_dts.csv -tss runge_kutta_4 generalized_alpha -wd 3 --exchange-substeps -o results/Fig10/data/third_degree_b-spline.csv
-# args:Namespace(template_path='configs/precice-config-template-FP.xml', config='configs/fig10_dts.csv', silent=True, executor='Github', max_time=1.0, base_time_window_size=0.04, time_window_refinements=5, base_time_step_refinement=[1, 1], time_step_refinements=1, time_step_refinement_factor=[2, 2], time_stepping_scheme=['runge_kutta_4', 'generalized_alpha'], waveform_degree=3, exchange_substeps=True, out_filename='results/Fig10/data/third_degree_b-spline.csv')
-# precice.get_version_information():b'3.2.0;no-info [git failed to run];PRECICE_FEATURE_MPI_COMMUNICATION=Y;PRECICE_FEATURE_PETSC_MAPPING=Y;PRECICE_FEATURE_GINKGO_MAPPING=N;PRECICE_FEATURE_PYTHON_ACTIONS=Y;PRECICE_BINDINGS_C=Y;PRECICE_BINDINGS_FORTRAN=Y;CXX=GNU;CXXFLAGS= -O3 -DNDEBUG;LDFLAGS='
+# participants version:{'Mass-Left': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/8/merge', 'chash': '3202eb513f485596bf76ab992ea7ac77fea1d47d'}, 'Mass-Right': {'url': 'BenjaminRodenberg/test-cases-dissertation', 'repo': 'refs/pull/8/merge', 'chash': '3202eb513f485596bf76ab992ea7ac77fea1d47d'}}
+# participants:{'Mass-Left': <prepesthel.participant.Participant object at 0x7f84ea432c90>, 'Mass-Right': <prepesthel.participant.Participant object at 0x7f84eaac84a0>}
+# run cmd:python3 doConvergenceStudy.py precice-config-FP.xml.jinja2 --silent --executor Github --config configs/fig10_dts.csv -tss runge_kutta_4 generalized_alpha -wd 3 --exchange-substeps -o results/Fig10/data/third_degree_b-spline.csv
+# args:Namespace(template_path='precice-config-FP.xml.jinja2', config='configs/fig10_dts.csv', silent=True, executor='Github', max_time=1.0, base_time_window_size=0.04, time_window_refinements=5, base_time_step_refinement=[1, 1], time_step_refinements=1, time_step_refinement_factor=[2, 2], time_stepping_scheme=['runge_kutta_4', 'generalized_alpha'], waveform_degree=3, exchange_substeps=True, out_filename='results/Fig10/data/third_degree_b-spline.csv')
+# precice.get_version_information():b'3.3.0;no-info [git failed to run];PRECICE_FEATURE_MPI_COMMUNICATION=Y;PRECICE_FEATURE_PETSC_MAPPING=Y;PRECICE_FEATURE_GINKGO_MAPPING=N;PRECICE_FEATURE_PYTHON_ACTIONS=Y;PRECICE_BINDINGS_C=Y;PRECICE_BINDINGS_FORTRAN=Y;CXX=GNU;CXXFLAGS= -O3 -DNDEBUG;LDFLAGS='
 # precice.__version__:3.2.1
 # precice_config_params:{'time_window_size': 0.0125, 'max_time': 1.0, 'waveform_degree': 3, 'substeps': True}
 time window size,time step size Mass-Left,time step size Mass-Right,error Mass-Left,error Mass-Right