An R library for working in the BLAB.
First, install the subprocess package. This package has been archived in CRAN, so we will remove it in the near future. Until then, use the following commands:
packageurl <- "https://cran.r-project.org/src/contrib/Archive/subprocess/subprocess_0.8.3.tar.gz" install.packages(packageurl, repos=NULL, type="source")
Then, to install blabr itself:
# install.packages("devtools") devtools::install_github('BergelsonLab/blabr')
You need to have a copy of the BLAB_DATA directory in your home folder. Clone the following BLAB_DATA repository (https://github.com/BergelsonLab/BLAB_DATA) to get an updated version of the data used in this package.
test if it worked
Open up RStudio, and try this out:
library(blabr) all_bl <- get_all_basiclevel()