.
├── capra_hircus
│ ├── bwadb
│ │ ├── Capra_hircus -> /bank/bwadb/Capra_hircus
│ │ ├── Capra_hircus.amb -> /bank/bwadb/Capra_hircus.amb
│ │ ├── Capra_hircus.ann -> /bank/bwadb/Capra_hircus.ann
│ │ ├── Capra_hircus.bwt -> /bank/bwadb/Capra_hircus.bwt
│ │ ├── Capra_hircus.pac -> /bank/bwadb/Capra_hircus.pac
│ │ └── Capra_hircus.sa -> /bank/bwadb/Capra_hircus.sa
│ ├── fasta
│ │ ├── alleleA_probeseq.fa
│ │ ├── Capra_hircus -> /bank/ncbi/genomes/Capra_hircus/current/fasta/Capra_hircus
│ │ ├── Capra_hircus.fai
│ │ ├── context.seq.fa
│ │ └── GCF_001704415.1_ARS1_assembly_report.txt
│ ├── manifests
│ │ ├── Goat_IGGC_65K_v2_15069617X365016_A2.csv
│ │ └── Goat_IGGC_65K_v2_15069617X365016_A2.csv.annot
│ └── sam
│ ├── alleleA_probeseq.sam
│ ├── alleleA_probseq.sam
│ └── context.seq.sam
├── chip2seq.R
├── chip2seq.Rout
└── README.md
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Mapping SNP chip alleles to reference genomes
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