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chip2seq

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├── capra_hircus
│   ├── bwadb
│   │   ├── Capra_hircus -> /bank/bwadb/Capra_hircus
│   │   ├── Capra_hircus.amb -> /bank/bwadb/Capra_hircus.amb
│   │   ├── Capra_hircus.ann -> /bank/bwadb/Capra_hircus.ann
│   │   ├── Capra_hircus.bwt -> /bank/bwadb/Capra_hircus.bwt
│   │   ├── Capra_hircus.pac -> /bank/bwadb/Capra_hircus.pac
│   │   └── Capra_hircus.sa -> /bank/bwadb/Capra_hircus.sa
│   ├── fasta
│   │   ├── alleleA_probeseq.fa
│   │   ├── Capra_hircus -> /bank/ncbi/genomes/Capra_hircus/current/fasta/Capra_hircus
│   │   ├── Capra_hircus.fai
│   │   ├── context.seq.fa
│   │   └── GCF_001704415.1_ARS1_assembly_report.txt
│   ├── manifests
│   │   ├── Goat_IGGC_65K_v2_15069617X365016_A2.csv
│   │   └── Goat_IGGC_65K_v2_15069617X365016_A2.csv.annot
│   └── sam
│       ├── alleleA_probeseq.sam
│       ├── alleleA_probseq.sam
│       └── context.seq.sam
├── chip2seq.R
├── chip2seq.Rout
└── README.md

5 directories, 19 files

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Mapping SNP chip alleles to reference genomes

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