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Commits on Dec 11, 2018
  1. Continuation to PR #308 (#340)

    dilawar authored and hrani committed Dec 11, 2018
    * Fixed docstrings of some functions.
    
    * Fixed attribute tests.
  2. Merge pull request #341 from hrani/master

    upibhalla committed Dec 11, 2018
    using existing restoreXreacs function to remove _xfer_ objects before…
Commits on Dec 10, 2018
  1. using existing restoreXreacs function to remove _xfer_ objects before…

    hrani committed Dec 10, 2018
    … writting into SBML and genesis files
Commits on Dec 4, 2018
  1. Merge pull request #339 from upibhalla/master

    dilawar committed Dec 4, 2018
    Fix to CaConc to factor in valence of 2. Update to rdesigneur to hand…
  2. Fix to CaConc to factor in valence of 2. Update to rdesigneur to hand…

    upibhalla committed Dec 4, 2018
    …le SBML files
  3. Merge pull request #338 from hrani/master

    upibhalla committed Dec 4, 2018
    reading and writing diff and motor constant for pool
  4. reading and writing diff and motor constant for pool

    hrani committed Dec 4, 2018
Commits on Dec 1, 2018
  1. Merge pull request #335 from hrani/master

    upibhalla committed Dec 1, 2018
    xref pool are not wirtten and cleaned up if part of Reaction/Enzyme
Commits on Nov 30, 2018
  1. groups and subgroups are written to sbml and read from xml files

    hrani committed Nov 30, 2018
Commits on Nov 24, 2018
  1. Merge branch 'master' into master

    dilawar committed Nov 24, 2018
  2. Merge pull request #336 from upibhalla/master

    dilawar committed Nov 24, 2018
    Fixes to Hsolve and Neuron
  3. Merge branch 'master' of https://github.com/BhallaLab/moose-core

    upibhalla committed Nov 24, 2018
  4. Fix to Im calculation in HSolve, to include external channels like re…

    upibhalla committed Nov 24, 2018
    …ceptors. Also fix to Neuron.cpp for setting channelDistribution, to always load Ca_concs first, to ensure that any dependent channels are able to find them.
  5. Merge branch 'master' into master

    dilawar committed Nov 24, 2018
  6. Merge pull request #331 from dilawar/master

    dilawar committed Nov 24, 2018
    Hot fix | Improved NML2 support
  7. Merge branch 'master' into master

    dilawar committed Nov 24, 2018
Commits on Nov 22, 2018
  1. Merge branch 'master' into master

    hrani committed Nov 22, 2018
  2. searching for _xfer_

    hrani committed Nov 22, 2018
  3. xref pool are not wirtten and cleaned up if part of Reaction/Enzyme o…

    hrani committed Nov 22, 2018
    …r notes,
    
    group are checked under all the mesh
Commits on Nov 21, 2018
  1. Merge pull request #333 from hrani/master

    upibhalla committed Nov 21, 2018
    Reading and creating CylMesh and EndoMesh if specified in the Annotat…
Commits on Nov 20, 2018
  1. Merge branch 'master' of http://github.com/hrani/moose-core

    hrani committed Nov 20, 2018
Commits on Nov 19, 2018
  1. Merge branch 'master' into master

    hrani committed Nov 19, 2018
  2. Reading and creating CylMesh and EndoMesh if specified in the Annotat…

    hrani committed Nov 19, 2018
    …ion field
Commits on Nov 16, 2018
  1. Merge branch 'master' of github.com:dilawar/moose-core

    dilawar committed Nov 16, 2018
Commits on Nov 14, 2018
  1. Merge pull request #330 from hrani/master

    upibhalla committed Nov 14, 2018
    CylMesh,EndoMesh,NeuroMesh compartment are written to SBML as compart…
Commits on Nov 13, 2018
  1. Tweaks.

    dilawar committed Nov 13, 2018
  2. Fixed the bug caused by previous two commits. Now I need to make sure…

    dilawar committed Nov 13, 2018
    … that
    
    ca pool is read at each timepoint.
  3. Using built in logging library.

    dilawar committed Nov 13, 2018
Commits on Nov 12, 2018
  1. xfer cross compartment molecules are not written as species and also …

    hrani committed Nov 12, 2018
    …for Reaction and Enzyme
Commits on Nov 9, 2018
  1. For CylMesh, totLength and diffLength is written to Annotation to get…

    hrani committed Nov 9, 2018
    … number of voxel
  2. gate with id z is loaded into gateZ in moose now.

    dilawar committed Nov 9, 2018
Commits on Nov 8, 2018
  1. Squashed commit of the following:

    dilawar committed Nov 8, 2018
    commit 5a789d9
    Author: Dilawar Singh <dilawars@ncbs.res.in>
    Date:   Thu Nov 8 21:41:11 2018 +0530
    
        Fixes to NML reader.
    
    commit b17c8ba
    Author: Dilawar Singh <dilawars@ncbs.res.in>
    Date:   Thu Nov 8 21:02:00 2018 +0530
    
        Temp commit. Added a skeleton of function to compute rate from moose
        classes.
    
    commit 6876865
    Author: Dilawar Singh <dilawars@ncbs.res.in>
    Date:   Thu Nov 8 09:55:27 2018 +0530
    
        When self.versbose is set, write the flattened file to XML.
Commits on Nov 7, 2018
  1. variable name used in before assignment cleanup

    hrani committed Nov 7, 2018
  2. CylMesh,EndoMesh,NeuroMesh compartment are written to SBML as compart…

    hrani committed Nov 7, 2018
    …ment with annotation field in which surround,isMembraneBound,numDiffCompts