Create a BridgeDb Gene-Variant database from Ensembl
- Read the source file, map the transcript identifier to gene identifier, and create the input .txt file for VariantCreator
- Specify the subset you want in the configuration file at the entry "subset"
VariantReader [Ensembl.vcf] [SNP.config]
- You can find the vcf source file here: homo_sapiens_incl_consequences.vcf.gz
- Build the BridgeDb Gene-Variant database, take a .config file as input