BridgeDbVariantDatabase

Create a BridgeDb Gene-Variant database from Ensembl

• Read the source file, map the transcript identifier to gene identifier, and create the input .txt file for VariantCreator
• Specify the subset you want in the configuration file at the entry "subset"

VariantReader [Ensembl.vcf] [SNP.config]

• You can find the vcf source file here: homo_sapiens_incl_consequences.vcf.gz

• Build the BridgeDb Gene-Variant database, take a .config file as input

VariantCreator [SNP.config]