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bigalgae @ 20c6b19
figures
training_images
uploaded_images
.gitignore
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README.md
analysis.py
bigalgae_analysis.py
perform_analysis.sh
plot.R
reference.jpg
training_data.tsv
uploaded_data.tsv
write_up.md

README.md

Computation methods write up for the Big Algae Open Experiment

The write up can be read fully here.

In order to run the image analysis scripts yourself, and regenerate the figures displayed in the write up, first clone the repository using the command:

git clone --recursive https://github.com/Big-Algae-Open-Experiment/computational_writeup.git

It is then just a case of running the perform_analysis.sh script.

The Python script requires the following modules to be installed

cv2 (OpenCV)
piexif
GPy
numpy
scipy
matplotlib
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