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PEPTIDESHAKER:1.10.3 Fixed missing variable in cmd line
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@Raynooo
Raynooo committed Dec 12, 2018
1 parent 9d3bbee commit 336729b
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions peptideshaker/1.10.3/Dockerfile
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Expand Up @@ -3,7 +3,7 @@ FROM biocontainers/biocontainers:v1.0.0_cv4

################## METADATA ######################
LABEL base_image="biocontainers:v1.0.0_cv4"
LABEL version="2"
LABEL version="3"
LABEL software="PeptideShaker"
LABEL software.version="1.10.3"
LABEL about.summary="interpretation of proteomics identification results"
Expand All @@ -21,7 +21,7 @@ RUN ZIP=PeptideShaker-1.10.3.zip && \
wget https://github.com/BioDocker/software-archive/releases/download/PeptideShaker/$ZIP -O /tmp/$ZIP && \
unzip /tmp/$ZIP -d /home/biodocker/bin/ && \
rm /tmp/$ZIP && \
bash -c 'echo -e "#!/bin/bash\njava -jar /home/biodocker/bin/PeptideShaker-1.10.3/PeptideShaker-1.10.3.jar $@"' > /home/biodocker/bin/PeptideShaker && \
bash -c 'echo -e "#!/bin/bash\njava -jar /home/biodocker/bin/PeptideShaker-1.10.3/PeptideShaker-1.10.3.jar \$@"' > /home/biodocker/bin/PeptideShaker && \
chmod +x /home/biodocker/bin/PeptideShaker

ENV PATH /home/biodocker/bin/PeptideShaker:$PATH
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1 comment on commit 336729b

@osallou
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No peptideshaker/1.10.3/test-cmds.txt (test file) present, skipping tests

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