Compatibility between R classes and BioJulia types for bioinformatics
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README.md

BioBridgeR.jl

Latest release:

Latest Release BioBridgeR License BioJulia maintainer: Ward9250

Development status:

Build Status Build status codecov

Description

BioBridgeR.jl provides submodules providing compatibility with biology and bioinformatics R packages by extending RCall.jl.

Each submodule is dedicated to one R package. Each submodule allows you to send BioJulia datatypes from a julia session to an R session, automatically converting them to an object of the relevant class from that R package. Conversely, objects of a class defined in the given R package can be transferred from the R session to a julia session, whilst automatically converting them to the relevant BioJulia data type.

Installation

Install BioBridgeR from the Julia REPL:

julia> Pkg.add("BioBridgeR")

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Contributing and Questions

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features. Please go to the contributing section of the documentation for more information.

If you have a question about contributing or using this package, you are encouraged to use the Bio category of the Julia discourse site.