Tools for genomic features in Julia.
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
.github
docs
src
test
.codecov.yml
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE.md
README.md
REQUIRE
appveyor.yml
sticker.svg

README.md

GenomicFeatures

latest release MIT license stable documentation latest documentation lifecycle Chat on Discord

Description

GenomicFeatures provides utilities for working with interval based genomic annotations. It builds on IntervalTrees to provide a data-structures, algorithms and IO tools for various formats such as BED, GFF3, bigWig and bigBed.

Installation

Install GenomicFeatures from the Julia REPL:

using Pkg
add("GenomicFeatures")
#Pkg.add("GenomicFeatures") for julia prior to v 0.7

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Testing

GenomicFeatures is tested against julia 0.6 and current 0.7-dev on Linux, OS X, and Windows.

Latest release Latest build status
julia06 julia07 travis appveyor coverage

Contributing and Questions

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the CONTRIBUTING file provided with this package for detailed contributor and maintainer guidelines.

If you have a question about contributing or using this package, come on over and chat to us on Discord, or you can try the Bio category of the Julia discourse site.