@BioJulia

BioJulia

Bioinformatics and Computational Biology in Julia

Pinned repositories

  1. Bio.jl

    Bioinformatics and Computational Biology Infrastructure for Julia

    Julia 205 55

  2. Contributing

    Documentation, guidelines, and policy on contributing to all BioJulia repositories

    4 1

  3. BioCore.jl

    Core types and interfaces for BioJulia packages

    Julia 4 6

  4. BioSymbols.jl

    Nucleic and amino acid primitive types and alphabets

    Julia 6 5

  5. BioSequences.jl

    Biological sequences for the julia language

    Julia 14 15

  6. GeneticVariation.jl

    Datastructures and algorithms for working with genetic variation

    Julia 6 5

  • Parse yer YAMLs

    Julia 27 24 Updated Sep 24, 2018
  • A julia package to read, write and manipulate macromolecular structures

    Julia 8 5 Updated Sep 23, 2018
  • Julia interface to APIs for various bio-related web services

    Julia 4 6 1 issue needs help Updated Sep 21, 2018
  • Interfaces to common external biological tools from julia scripts and programs

    Julia 1 2 MIT Updated Sep 19, 2018
  • Sequence alignment tools

    Julia 5 5 MIT Updated Sep 18, 2018
  • Biological sequences for the julia language

    Julia 14 15 MIT Updated Sep 18, 2018
  • Fully indexable dictionaries - access/rank/select operations

    Jupyter Notebook 6 4 Updated Sep 10, 2018
  • Tools for genomic features in Julia.

    Julia 3 7 Updated Sep 9, 2018
  • Biological Sequence Substitution Models for Julia

    Julia 5 3 Updated Sep 6, 2018
  • A companion package for Microbiome.jl for working with the Biobakery family of computational tools

    Julia Updated Aug 30, 2018
  • Julia Updated Aug 30, 2018
  • Nucleic and amino acid primitive types and alphabets

    Julia 6 5 MIT Updated Aug 23, 2018
  • A data structure for efficient manipulation of sets of intervals

    Julia 16 10 MIT Updated Aug 20, 2018
  • A julia package to parse and write MMTF file

    Julia 2 1 MIT Updated Aug 18, 2018
  • Core types and interfaces for BioJulia packages

    Julia 4 6 MIT Updated Aug 17, 2018
  • BGZF Stream

    Julia 6 6 Updated Aug 17, 2018
  • Biological sequence graph representations for genome analysis

    Julia 2 MIT Updated Aug 16, 2018
  • Common data encoding algorithms

    Julia 7 13 Updated Aug 15, 2018
  • A julia code generator for regular expressions

    Julia 40 7 Updated Aug 14, 2018
  • Datastructures and algorithms for working with genetic variation

    Julia 6 5 MIT Updated Aug 13, 2018
  • For analysis of microbiome and microbial community data

    Julia 6 4 Updated Aug 13, 2018
  • Fast, flexible zlib bindings.

    Julia 14 14 Updated Aug 11, 2018
  • Fast composable IO streams

    Julia 17 15 MIT Updated Aug 11, 2018
  • Main Package for IO, loading all different kind of files

    Julia 40 Updated Aug 7, 2018
  • The Wavelet Matrix

    Julia 7 4 Updated Jul 30, 2018
  • Bioinformatics and Computational Biology Infrastructure for Julia

    Julia 205 55 MIT Updated Jul 19, 2018
  • A collection of bioinformatics file format specimens to test against

    Roff 23 7 Updated Jul 9, 2018
  • A wrapper for the BSG library and suite of tools

    MIT Updated Jul 6, 2018
  • Stickers and logos for BioJulia packages

    MIT Updated Jul 2, 2018
  • Julia 5 2 Updated Jun 29, 2018