{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":42595105,"defaultBranch":"master","name":"bpp-phyl","ownerLogin":"BioPP","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2015-09-16T15:14:33.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/14318293?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1696510297.0","currentOid":""},"activityList":{"items":[{"before":"cde609cf1ac9de74932a4ab33de4e13f0f87645e","after":"bca7ee9085ee6cea9d643b728e3b5337e2473713","ref":"refs/heads/master","pushedAt":"2024-07-11T18:52:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Update of graphic classes\n\n- Pointer to ref.\n- Fixed doxyfile.","shortMessageHtmlLink":"Update of graphic classes"}},{"before":"9cce5c127f3c6974bc7a3f3bad3b83e991c0116b","after":"cde609cf1ac9de74932a4ab33de4e13f0f87645e","ref":"refs/heads/master","pushedAt":"2024-07-03T19:52:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"clean doxy","shortMessageHtmlLink":"clean doxy"}},{"before":"c541717359506afbbe403d1e5c29b17d0dfb365d","after":"9cce5c127f3c6974bc7a3f3bad3b83e991c0116b","ref":"refs/heads/master","pushedAt":"2024-07-02T04:03:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl"}},{"before":"46e6b502f8f8f2989f388073fcbf0e353dad4d38","after":"c541717359506afbbe403d1e5c29b17d0dfb365d","ref":"refs/heads/master","pushedAt":"2024-06-30T20:52:20.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"misc in Hmm","shortMessageHtmlLink":"misc in Hmm"}},{"before":"a3da92984e0cd79b88fb973442c77f4b0578d508","after":"b14ca10ccc78720532a1210900d085a5b3b23dfa","ref":"refs/heads/Integration","pushedAt":"2024-06-24T14:40:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"allow diff exponent in CWiseCompound","shortMessageHtmlLink":"allow diff exponent in CWiseCompound"}},{"before":"8c5028e9b030f4d514e9f8267dba4a460dd40f0a","after":"a3da92984e0cd79b88fb973442c77f4b0578d508","ref":"refs/heads/Integration","pushedAt":"2024-06-21T08:29:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"fix setFreq in Integrate","shortMessageHtmlLink":"fix setFreq in Integrate"}},{"before":"732c7a4a360e954fa94bdb710871f724493d8a7c","after":"8c5028e9b030f4d514e9f8267dba4a460dd40f0a","ref":"refs/heads/Integration","pushedAt":"2024-06-19T14:26:03.000Z","pushType":"push","commitsCount":101,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"Merge branch 'master' into Integration","shortMessageHtmlLink":"Merge branch 'master' into Integration"}},{"before":"83c61c8083008a4c3ffeac14513770284c5b7ed2","after":"46e6b502f8f8f2989f388073fcbf0e353dad4d38","ref":"refs/heads/master","pushedAt":"2024-06-14T15:59:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"set parameter & alias input as param1=param2","shortMessageHtmlLink":"set parameter & alias input as param1=param2"}},{"before":"fdcfe8f7a1288e4f96ea5dccee7cdd6963489053","after":"83c61c8083008a4c3ffeac14513770284c5b7ed2","ref":"refs/heads/master","pushedAt":"2024-06-14T11:00:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl"}},{"before":"b3df88abe8eb0108427e73b8d801481059915a96","after":"fdcfe8f7a1288e4f96ea5dccee7cdd6963489053","ref":"refs/heads/master","pushedAt":"2024-06-14T09:20:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Fixed type.","shortMessageHtmlLink":"Fixed type."}},{"before":"fc6d525a8eb8d9b43e8c9d089f9f82ebac592c3a","after":"b3df88abe8eb0108427e73b8d801481059915a96","ref":"refs/heads/master","pushedAt":"2024-06-11T21:25:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"fix Hmm forward computation","shortMessageHtmlLink":"fix Hmm forward computation"}},{"before":"8c3e3ccfdb81bdfabd07f04e3801a191ee9cfcc1","after":"fc6d525a8eb8d9b43e8c9d089f9f82ebac592c3a","ref":"refs/heads/master","pushedAt":"2024-06-09T22:11:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"fix input formula phylo","shortMessageHtmlLink":"fix input formula phylo"}},{"before":"20b7bec0579dc0c022613c3d2e5d5c5af1ccd60a","after":"8c3e3ccfdb81bdfabd07f04e3801a191ee9cfcc1","ref":"refs/heads/master","pushedAt":"2024-06-06T09:15:44.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl"}},{"before":"ae00c71443692d5f694b5f93a99c700b293b1f0b","after":"20b7bec0579dc0c022613c3d2e5d5c5af1ccd60a","ref":"refs/heads/master","pushedAt":"2024-06-05T19:24:53.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Switched to ref.","shortMessageHtmlLink":"Switched to ref."}},{"before":"9aebee4485d2210173b0836447f4e20f68ead6dd","after":"ae00c71443692d5f694b5f93a99c700b293b1f0b","ref":"refs/heads/master","pushedAt":"2024-05-30T20:21:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"input optim","shortMessageHtmlLink":"input optim"}},{"before":"2ec7e58516d3386570341209c01e7898854a158f","after":"9aebee4485d2210173b0836447f4e20f68ead6dd","ref":"refs/heads/master","pushedAt":"2024-05-30T15:11:16.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"end update DistanceEstimation & buildDistanceTree optim","shortMessageHtmlLink":"end update DistanceEstimation & buildDistanceTree optim"}},{"before":"341e48b4e0513be27c48892cbca34e912c1ae7d0","after":"2ec7e58516d3386570341209c01e7898854a158f","ref":"refs/heads/master","pushedAt":"2024-05-29T15:49:41.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"update Distance methods (under work)","shortMessageHtmlLink":"update Distance methods (under work)"}},{"before":"61f0818354a64466bcda963357ba2ebdf28ed380","after":"341e48b4e0513be27c48892cbca34e912c1ae7d0","ref":"refs/heads/master","pushedAt":"2024-05-22T09:23:24.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"better output","shortMessageHtmlLink":"better output"}},{"before":"53a7c315fa2336789400fd558c74f3ef20606d03","after":"61f0818354a64466bcda963357ba2ebdf28ed380","ref":"refs/heads/master","pushedAt":"2024-05-18T11:01:14.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl"}},{"before":"dfc8cda0f0c5498d594a4c4732f730d38e495e32","after":"53a7c315fa2336789400fd558c74f3ef20606d03","ref":"refs/heads/master","pushedAt":"2024-05-03T16:19:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Fixed PatternTools return in function.","shortMessageHtmlLink":"Fixed PatternTools return in function."}},{"before":"088e20c19b99eb1d164fd422d78af9106ec13f92","after":"dfc8cda0f0c5498d594a4c4732f730d38e495e32","ref":"refs/heads/master","pushedAt":"2024-04-30T12:33:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Removed unecessary pointer.","shortMessageHtmlLink":"Removed unecessary pointer."}},{"before":"9ca64133fe5b739b1088fe212b1d680a47218aab","after":"088e20c19b99eb1d164fd422d78af9106ec13f92","ref":"refs/heads/master","pushedAt":"2024-04-12T14:24:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Rearranged PatternTools.","shortMessageHtmlLink":"Rearranged PatternTools."}},{"before":"cb4538e06727099d2088836e9e241c11a2eb5636","after":"9ca64133fe5b739b1088fe212b1d680a47218aab","ref":"refs/heads/master","pushedAt":"2024-04-11T10:42:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Moved to new NumericalDerivativeInterface.","shortMessageHtmlLink":"Moved to new NumericalDerivativeInterface."}},{"before":"b936d1a43514317a4e27bbc5dbe5922a6b643b80","after":"cb4538e06727099d2088836e9e241c11a2eb5636","ref":"refs/heads/master","pushedAt":"2024-04-11T10:05:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Moved IODistanceMatrix to bpp-seq.","shortMessageHtmlLink":"Moved IODistanceMatrix to bpp-seq."}},{"before":"d76e371456adbbf3b2c26c4da75fb09b3e39137a","after":"b936d1a43514317a4e27bbc5dbe5922a6b643b80","ref":"refs/heads/master","pushedAt":"2024-04-11T09:01:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Removed classic pointers towards Alphabets.","shortMessageHtmlLink":"Removed classic pointers towards Alphabets."}},{"before":"6498b171125fd4da459e6d6b858c0f1763362747","after":"d76e371456adbbf3b2c26c4da75fb09b3e39137a","ref":"refs/heads/master","pushedAt":"2024-04-05T07:38:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"doc on Coala","shortMessageHtmlLink":"doc on Coala"}},{"before":"12cb66dab5aa31ff02bcb73fe2ade2119ac3c593","after":"6498b171125fd4da459e6d6b858c0f1763362747","ref":"refs/heads/master","pushedAt":"2024-04-05T00:26:41.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"lgueguen","name":"Laurent Guéguen","path":"/lgueguen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8245975?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/BioPP/bpp-phyl"}},{"before":"0efaf455a12e02967e65f5fa24f651fdeab14157","after":"12cb66dab5aa31ff02bcb73fe2ade2119ac3c593","ref":"refs/heads/master","pushedAt":"2024-04-02T15:11:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Per site mapping output in SGEd format.","shortMessageHtmlLink":"Per site mapping output in SGEd format."}},{"before":"a825174aa70f8664042f1d295297c61cfee950cb","after":"0efaf455a12e02967e65f5fa24f651fdeab14157","ref":"refs/heads/master","pushedAt":"2024-04-02T10:29:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"More CLang warning msgs removed.","shortMessageHtmlLink":"More CLang warning msgs removed."}},{"before":"2570ae98f0a49f2fcb287ffd698654ec9240e2a2","after":"a825174aa70f8664042f1d295297c61cfee950cb","ref":"refs/heads/master","pushedAt":"2024-03-25T19:09:20.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jydu","name":"Julien Y. Dutheil","path":"/jydu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11715877?s=80&v=4"},"commit":{"message":"Merge pull request #53 from mr-c/cxx-flags\n\nDo not override user-provided CXX flags","shortMessageHtmlLink":"Merge pull request #53 from mr-c/cxx-flags"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEfSlojwA","startCursor":null,"endCursor":null}},"title":"Activity · BioPP/bpp-phyl"}