Bioconductor facilities for parallel evaluation (experimental)
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R allow bphost as global option Oct 29, 2016
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man bugfix: allow character-based specification of (snow) workers Mar 12, 2016
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vignettes documentation: defualt multi-cores is detectCores() - 2 Nov 17, 2016
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DESCRIPTION documentation: defualt multi-cores is detectCores() - 2 Nov 17, 2016
NAMESPACE introduce bpnworkers() Mar 12, 2016
NEWS throttle # workers on systems with BBS_HOME env variable Aug 14, 2016
README.md Commit made by the Bioconductor Git-SVN bridge. May 15, 2015

README.md

BiocParallel

Bioconductor facilities for parallel evaluation (experimental)

Possible TODO

  • map/reduce-like function
  • bpforeach?
  • Abstract scheduler
  • lazy DoparParam
  • SnowParam support for setSeed, recursive, cleanup
  • subset SnowParam

DONE

  • encapsulate arguments as ParallelParam()
  • Standardize signatures
  • Make functions generics
  • parLapply-like function
  • Short vignette
  • elaborate SnowParam for SnowSocketParam, SnowForkParam, SnowMpiParam, ...
  • MulticoreParam on Windows

github notes

  • commit one-liners with names

    git log --pretty=format:"- %h %an: %s"

TO FIX

  • DoparParam does not pass foreach args (specifically access to .options.nws for chunking)