Join GitHub today
GitHub is home to over 50 million developers working together to host and review code, manage projects, and build software together.Sign up
GitHub is where the world builds software
Millions of developers and companies build, ship, and maintain their software on GitHub — the largest and most advanced development platform in the world.
rowData rownames issue explored at BioC2018 #13
Here is a reproducing example for a potential issue in the devel branch version of SummarizedExperiment. It seems an inconsistency in rownames of rowData and rownames of the SE, which would prevent creation of an SE, is nevertheless allowed during rowData re-assignment.
We tried with SummarizedExperiment v1.11.5 (so use.names=TRUE is the default).
Thank Mike. I'll look into this.
Note that it has never been a requirement for
Also note that a SummarizedExperiment object
A compromise could be to only issue a warning that the row names differ and are being ignored. That won't break any code and people who have code that triggers the annoying warning will then decide if they want to remove or fix the row names of
I'll evaluate the impact of the 1st solution (i.e. raising an error) and if it turns out to be too disruptive we'll go for the 2nd solution (the warning).