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Package: VariantAnnotation
Type: Package
Title: Annotation of Genetic Variants
Description: Annotate variants, compute amino acid coding changes,
predict coding outcomes
Version: 1.5.26
Author: Valerie Obenchain, Martin Morgan, Michael Lawrence with
contributions from Stephanie Gogarten.
Maintainer: Valerie Obenchain <vobencha@fhcrc.org>
License: Artistic-2.0
biocViews: DataImport, Sequencing, HighThroughputSequencing, SNP, Annotation,
Genetics, Homo_sapiens
Depends: R (>= 2.8.0), methods, BiocGenerics, GenomicRanges (>= 1.9.56),
Rsamtools (>= 1.11.7), IRanges (>= 1.17.4)
Imports: methods, BiocGenerics, IRanges, Biostrings, Biobase,
Rsamtools (>= 1.9.4), AnnotationDbi (>= 1.17.11),
zlibbioc, BSgenome, GenomicFeatures (>= 1.9.35), DBI, utils
Suggests: RUnit, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815, SNPlocs.Hsapiens.dbSNP.20101109,
SIFT.Hsapiens.dbSNP132, PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2
LinkingTo: IRanges, Biostrings, Rsamtools
LazyLoad: yes
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