Java Evolutionary Biology Library
A Java library for evolutionary biology and bioinformatics, including objects representing biomolecular sequences, multiple sequence alignments and phylogenetic trees.
- Java Development Kit 1.6+
- Apache Ant
Run the following command from within the jebl directory:
The built jebl.jar library in the dist folder can then be included in your project.
To produce the Javadoc in the doc directory run the following:
This project includes three components:
org.virion.jam.maconly that can only be built under Mac OS X. A pre-built version is located in the lib directory so it can be included on the classpath for non-Macs. If anything is changed in this package then it has to be built separately (see the -mac-only targets).
If you are using an IDE and not on a Mac then you will need to exclude org.virion.jam.maconly in order to compile the project.
- Log issues in [Github issue tracker|https://github.com/Biomatters/JEBL/issues]
- Pull requests are welcome, we will try to review them in a timely manner