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@Biomedical-Imaging-Group

Biomedical Imaging Group

The BIG pursues research on the development of new algorithms and mathematical tools for the advanced processing of medical and biological images

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  1. DeepSplines DeepSplines Public

    A learnable linear spline module (PyTorch)

    Python

  2. GlobalBioIm GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    MATLAB 76 36

  3. DeconvolutionLab2 DeconvolutionLab2 Public

    Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

    Java 45 15

  4. Generating-Sparse-Processes Generating-Sparse-Processes Public

    Jupyter Notebook 1 1

Repositories

Showing 10 of 18 repositories
  • DeepSplines Public

    A learnable linear spline module (PyTorch)

    Biomedical-Imaging-Group/DeepSplines’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 6, 2024
  • Biomedical-Imaging-Group/IPLABs-distribution-2023’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated May 23, 2024
  • GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    Biomedical-Imaging-Group/GlobalBioIm’s past year of commit activity
    MATLAB 76 GPL-3.0 36 8 (1 issue needs help) 0 Updated Mar 25, 2024
  • SingleCellClassifier Public

    Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.

    Biomedical-Imaging-Group/SingleCellClassifier’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 1 0 0 Updated Jun 30, 2023
  • Continuous_FRC_SMLM Public

    Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)

    Biomedical-Imaging-Group/Continuous_FRC_SMLM’s past year of commit activity
    Python 5 MIT 2 0 0 Updated Jun 5, 2023
  • Interactive-Cell-Lineage-Tracer Public

    ImageJ plugin to track and mesure cells. Chiara Toniolo, Daniel Sage

    Biomedical-Imaging-Group/Interactive-Cell-Lineage-Tracer’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Apr 17, 2023
  • mij Public

    MIJ Matlab-ImageJ connector

    Biomedical-Imaging-Group/mij’s past year of commit activity
    Java 1 GPL-3.0 1 0 0 Updated Apr 3, 2023
  • EDF-Extended-Depth-of-Field Public

    An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

    Biomedical-Imaging-Group/EDF-Extended-Depth-of-Field’s past year of commit activity
    Java 9 GPL-3.0 4 0 0 Updated Apr 2, 2023
  • CryoEM-Joint-Refinement Public

    Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.

    Biomedical-Imaging-Group/CryoEM-Joint-Refinement’s past year of commit activity
    MATLAB 2 1 0 0 Updated Sep 16, 2022
  • interactive-kit Public

    A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.

    Biomedical-Imaging-Group/interactive-kit’s past year of commit activity
    Python 9 MIT 6 3 1 Updated Mar 31, 2022