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Dependencies:

GNU make, g++ , zlib (for samtools API used in parseAlignment program) Optional: python - for helper scripts getCount.py, extractTranscriptInfo.py

Compilation:

Enter BitSeq directory and run: make

Help & Usage:

See webpage for more information: http://bitseq.github.io/

Contact:

Please use local issue tracker: https://github.com/BitSeq/BitSeq/issues for help, issue resolution and comments.

For direct contact, please contact Panagiotis Papastamoulis (panagiotis.papastamoulis [at] manchester.ac.uk) or Antti Honkela (antti.honkela [at] hiit.fi).

License:

Artistic-2.0

  • Boost_1_0 for directory boost
  • MIT for directory samtools
  • LGPL for directory asa103

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