Introduction

BlueBrain Python Optimisation Library

This software is currently in an ALPHA stage. Use at your own risk.

Requirements

Python 2.7+
Pip (installed by default in newer versions of Python)
BlueBrain version of DEAP
Neuron 7.4 (compiled with Python support)
eFEL eFeature Extraction Library (automatically installed by pip)
Numpy (automatically installed by pip)
Pandas (automatically installed by pip)
The instruction below are written assuming you have access to a command shell on Linux / UNIX / MacOSX / Cygwin

After installing Neuron and DEAP, run the following command:

pip install bluepyopt

We provide instruction on how to set up an optimisation environment on cloud infrastructure or cluster computers here

An iPython notebook with an introductory optimisation of a one compartmental model with 2 HH channels can be found here

Scripts for a more complex neocortical L5PC are in this directory

The API documentation can be found here

	Failed to load latest commit information.
	bluepyopt
	cloud-config
	docs
	examples
	.codeclimate.yml
	.gitignore
	.travis.yml
	.travis_install_neuron.sh
	AUTHORS.txt
	LGPL.txt
	LICENSE.txt
	MANIFEST.in
	Makefile
	README.md
	requirements.txt
	setup.cfg
	setup.py
	versioneer.py