This repository has been archived by the owner on Jul 8, 2022. It is now read-only.
Releases: BlueBrain/Fivox
Releases · BlueBrain/Fivox
0.7.0
- #85
All timestamps changed to double.
Default duration changed to 1 ms. - #82
Frame duration moved from SpikeLoader internals to a public attribute of
EventSource. - #81
Replace TestLoader by GenericLoader, adding the possibility to load events
from file - #77,
#78
Enable CUDA implementation of the lfp computation
0.6.0
- #74
Bug fix in compute-vsd. Only one .psh file was generated. - #69
Add option in compute-vsd tool to export the VSD events as point sprite files - #65
Add option in compute-vsd tool to export the soma positions as a text file - #64
Change default parameters: resolution is now 0.1 voxels/um by default - #63
Fix the volume writing when there are dots in the output path - #61
Use the timestamp in the output file names (only in compute-vsd) - #59
Add compute-vsd tool - #60
Auto-adapt chunk size in EventValueSummationImageSource based on load time - #56
Add synapse_densities.py tool - #56
Datasource for livre now reports description - #55
Synapse densities support- New 'preTarget' and 'postTarget' URI parameters to support synaptic
projections - New EventValueSummationImageSource that voxelizes by iterating over events
rather than voxels; used now for synapses and spikes. The current
ImageSource is now renamed FunctorImageSource and ImageSource is now the
base class for those two sources. - New out-of-core chunking support for event sources, implemented for
SynapseLoader - Unify rescaling for non-float volumes; done by ScaleFilter
- New functions URIHandler::newFunctor() and URIHandler::newEventSource() in
cases no image source is needed, e.g. sample-point
- New 'preTarget' and 'postTarget' URI parameters to support synaptic
- #53
Add support for volume setup via reference volume with 'reference' parameter
in volume URI
Add 'gidfraction' parameter in volume URI
Changed the default 'resolution' to 1 instead of 10 voxel per micrometer - #47
Fivox computes the data to Livre transform matrix and the meterToDataUnitRatio
parameter - #48
Add tool to compute the evolution of data at a specific point over time.
Remove support of deprecated #target in the volume URI. - #45
Add parameter to extend the volume size. The cutoff distance no longer grows
the resulting volume. - #44
Optimizations. Modify memory layout in EventSource so computations can be
vectorized for performance.
0.5.0
0.4.0
- #23
Add resolution parameter in voxelize_batch script.
Fix naming (zero-pad) when generating a series of volumes. - #12
Fix progress report to include of all threads - #21
New voxelize_batch.py script to generate volumes on cluster nodes. - #10
voxelize: Limit volume to area covered by events. - #10
Rescale to the output type range for integer volumes. - #9
Add testLoader for validation purposes. - #4
Add LFP functor from separate repo. Move all the voltage-specific logic to
the FieldFunctor, so CompartmentLoader can be used with other type of reports
(e.g. currents in LFP).
Add radius attribute in Event, used in the CompartmentLoader.
Adapt tests and default values to latest TestData (370ebee). - #7:
Add data decomposition in voxelize tool. - 20437
Expose the VSD projection attenuation coefficient (absorption + scattering)
in the voxelize command line tool. - 20428
Fix several bugs in the VSD loader, which crashed the application when
loading events.
Update the reference BlueConfigVSD to point to existing data. - 20308
Use a custom type for the output volume in the voxelize tool. - 20241
Add --projection option in voxelize tool. When enabled, generate a 2D
projection of the resulting volume, emulating the output of a VSD imaging
process. It uses the newly added ITK projection filter
BeerLambertProjectionImageFilter. - 19753
Fix [ISC-139]. Make sure the requested end time is inside the available time
range when streaming spikes. - 19713
Add optional progress bar display if showProgress=1 in URI query. - 19230
Add support for volume time series generation for voxelize tool. - 19188
Bug fixes in compartment report indexing in compartment and VSD loaders. - 19077
Dt defaults to experiment/report dt, duration to 10.