BodenmillerGroup
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CellProfiler
Forked from CellProfiler/CellProfilerAn open-source application for biological image analysis
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ilastik
Forked from ilastik/ilastikilastik-shell, applets, and workflows to string them together.
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CellProfiler plugins for multiplexed image analysis
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Histology Topography Cytometry Analysis Toolbox
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A pixelclassification based multiplexed image segmentation pipeline
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Tools to handle IMC data
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keras-preprocessing
Forked from keras-team/keras-preprocessingUtilities for working with image data, text data, and sequence data.
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SpheroidPaper
Forked from votti/SpheroidPaperRepository for the Spheroid Paper of VZs PhD
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Git introduction
GPL-3.0 UpdatedOct 10, 2018 -
IMCMapper
Forked from ndamond/IMCMapperFunctions for displaying IMC images and data in R
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Rphenograph
Forked from JinmiaoChenLab/RphenographRphenograph: R implementation of the PhenoGraph algorithm
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Companion repository for the paper 'Compensation of signal spillover in suspension and imaging mass cytometry'
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MCD file parser library
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cytofkit
Forked from JinmiaoChenLab/cytofkitcytofkit: an integrated flow/mass cytometry data analysis pipeline
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Repository for the analysis of the paper "Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry"
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