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@Borda Borda released this Nov 19, 2019 · 1 commit to master since this release

Extended update related to Automatic Non-rigid Histological Image Registration (ANHIR) submission, adding SOA methods, package refactoring, updating evaluation. Also, the ANHIR notebook with visual comparisons is updated accordingly.

Added State-of-The-Art methods:

  • ANTs & ANTsPy
  • DROP2
  • Elastix
  • RVSS (ImageJ)

Main changes:

  • cut-out package tests
  • use package relative imports
  • add command timeout & fix hist. match
  • rename measures TRE, IRE
  • update eval. submission
    • eval: jit filter landmarks
    • update compute stats
  • minor refacroting:
    • rename some variables & parameters
    • simplify expt. mains - Bm.main
    • move constants/methods to class
    • move Experiments to birl.utilities.experiments
    • rename visualisation and cls_benchmarks
  • update ANHIR results in ipynb
  • using enlighten progress-bar
  • update docs & fix ReadTheDocs
  • resize sample images/landmarks
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