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@BradhamLab

BradhamLab

Developmental biology lab at Boston University headed by Cynthia A. Bradham

Popular repositories

  1. icat icat Public

    Identifying Cell-states Across Treatments

    Python 4 1

  2. vnet.pytorch vnet.pytorch Public

    Forked from mattmacy/vnet.pytorch

    A PyTorch implementation for V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation

    Python 1

  3. ncfs ncfs Public

    Modified NCFS algorithm for neighbor-based feature selection

    Python 1

  4. indrops-star indrops-star Public

    Pipeline to analyze Indrops V3 data using STARsolo

    Python 1

  5. oif oif Public

    Extract images and metadata from .oif files.

    Python

  6. csv2blender csv2blender Public

    Convert a .csv file of embryo coordinates to a blender model.

    Python

Repositories

Showing 10 of 23 repositories
  • Lverage Public

    Motif Finder pipeline - searching for motifs through orthologous species.

    BradhamLab/Lverage’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Jul 29, 2024
  • AZ-paper-analysis-code Public

    Code for the DE and enricment analysis for the paper entitled Alizarin Red perturbs skeletal patterning and biomineralization via Catalase inhibition.

    BradhamLab/AZ-paper-analysis-code’s past year of commit activity
    R 0 0 0 0 Updated Jun 25, 2024
  • sslouvain Public

    Forked from https://github.com/vtraag/louvain-igraph

    BradhamLab/sslouvain’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Jun 13, 2024
  • ethanol_2022 Public

    Pipeline to analyze RNAseq data from Rodriguez-Sastre 2022

    BradhamLab/ethanol_2022’s past year of commit activity
    R 0 1 0 1 Updated Mar 11, 2024
  • scPipe Public

    Pipeline for scRNAseq read alignment

    BradhamLab/scPipe’s past year of commit activity
    Python 0 Apache-2.0 0 17 0 Updated Feb 7, 2024
  • icat Public

    Identifying Cell-states Across Treatments

    BradhamLab/icat’s past year of commit activity
    Python 4 BSD-3-Clause 1 1 0 Updated Oct 19, 2023
  • dbd_comparison Public

    repository for comparing DNA Binding Sites for motif selection

    BradhamLab/dbd_comparison’s past year of commit activity
    Python 0 0 0 0 Updated Jun 7, 2023
  • indrops-star Public

    Pipeline to analyze Indrops V3 data using STARsolo

    BradhamLab/indrops-star’s past year of commit activity
    Python 1 BSD-3-Clause 0 1 0 Updated Jun 6, 2023
  • pmc_detection Public

    Workflow for detecting PMCs in confocal images

    BradhamLab/pmc_detection’s past year of commit activity
    Python 0 BSD-3-Clause 1 9 0 Updated May 31, 2023
  • lvar3_extract Public

    Extract desired sequences from the Lvar3.0 genome

    BradhamLab/lvar3_extract’s past year of commit activity
    Python 0 1 6 0 Updated Feb 10, 2023
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