diff --git a/preprocessing/preprocessing_tutorial.ipynb b/preprocessing/preprocessing_tutorial.ipynb index 7c3f904..9344955 100644 --- a/preprocessing/preprocessing_tutorial.ipynb +++ b/preprocessing/preprocessing_tutorial.ipynb @@ -228,7 +228,13 @@ "from brainles_preprocessing.brain_extraction import HDBetExtractor\n", "from brainles_preprocessing.modality import Modality\n", "from brainles_preprocessing.preprocessor import Preprocessor\n", - "from brainles_preprocessing.registration import NiftyRegRegistrator\n", + "from brainles_preprocessing.registration import (\n", + " ANTsRegistrator,\n", + " NiftyRegRegistrator,\n", + " eRegRegistrator,\n", + ")\n", + "\n", + "# ANTSRegistrator (default), NiftyRegRegistrator (Linux), eRegRegistrator (experimental)\n", "\n", "\n", "def preprocess_exam_in_brats_style(inputDir: str) -> None:\n", @@ -319,7 +325,7 @@ " preprocessor = Preprocessor(\n", " center_modality=center,\n", " moving_modalities=moving_modalities,\n", - " registrator=NiftyRegRegistrator(),\n", + " registrator=ANTsRegistrator(),\n", " brain_extractor=HDBetExtractor(),\n", " # optional: we provide a temporary directory as a sandbox for the preprocessin\n", " temp_folder=\"temporary_directory\",\n",