From 2779ddec0908bcef8c4d386aef75991382d449d8 Mon Sep 17 00:00:00 2001
From: evamariie <106267274+evamariie@users.noreply.github.com>
Date: Sun, 28 Apr 2024 18:19:30 +0200
Subject: [PATCH 1/3] Update preprocessing_tutorial.ipynb

Add comment:
> Import all 3 Registrators
> set ANTs as default
---
 preprocessing/preprocessing_tutorial.ipynb | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/preprocessing/preprocessing_tutorial.ipynb b/preprocessing/preprocessing_tutorial.ipynb
index 7c3f904..0cc0071 100644
--- a/preprocessing/preprocessing_tutorial.ipynb
+++ b/preprocessing/preprocessing_tutorial.ipynb
@@ -228,7 +228,11 @@
     "from brainles_preprocessing.brain_extraction import HDBetExtractor\n",
     "from brainles_preprocessing.modality import Modality\n",
     "from brainles_preprocessing.preprocessor import Preprocessor\n",
-    "from brainles_preprocessing.registration import NiftyRegRegistrator\n",
+    "from brainles_preprocessing.registration import ("
+    "    ANTsRegistrator #default",
+    "    NiftyRegRegistrator #support Linux",
+    "    eRegRegistrator #experimental",
+    "    )",
     "\n",
     "\n",
     "def preprocess_exam_in_brats_style(inputDir: str) -> None:\n",
@@ -319,7 +323,7 @@
     "        preprocessor = Preprocessor(\n",
     "            center_modality=center,\n",
     "            moving_modalities=moving_modalities,\n",
-    "            registrator=NiftyRegRegistrator(),\n",
+    "            registrator=ANTsRegistrator(),\n",
     "            brain_extractor=HDBetExtractor(),\n",
     "            # optional: we provide a temporary directory as a sandbox for the preprocessin\n",
     "            temp_folder=\"temporary_directory\",\n",

From 7c6fcfebab0e0ca1bf8fdc566f3bd64445a60245 Mon Sep 17 00:00:00 2001
From: evamariie <106267274+evamariie@users.noreply.github.com>
Date: Sun, 28 Apr 2024 18:24:00 +0200
Subject: [PATCH 2/3] Update preprocessing_tutorial.ipynb

---
 preprocessing/preprocessing_tutorial.ipynb | 7 ++-----
 1 file changed, 2 insertions(+), 5 deletions(-)

diff --git a/preprocessing/preprocessing_tutorial.ipynb b/preprocessing/preprocessing_tutorial.ipynb
index 0cc0071..175320b 100644
--- a/preprocessing/preprocessing_tutorial.ipynb
+++ b/preprocessing/preprocessing_tutorial.ipynb
@@ -228,11 +228,8 @@
     "from brainles_preprocessing.brain_extraction import HDBetExtractor\n",
     "from brainles_preprocessing.modality import Modality\n",
     "from brainles_preprocessing.preprocessor import Preprocessor\n",
-    "from brainles_preprocessing.registration import ("
-    "    ANTsRegistrator #default",
-    "    NiftyRegRegistrator #support Linux",
-    "    eRegRegistrator #experimental",
-    "    )",
+    "from brainles_preprocessing.registration import ANTsRegistrator, NiftyRegRegistrator, eRegRegistrator\n",
+    "# ANTSRegistrator (default), NiftyRegRegistrator (Linux), eRegRegistrator (experimental)\n",
     "\n",
     "\n",
     "def preprocess_exam_in_brats_style(inputDir: str) -> None:\n",

From c97d024656e3994fb15e22d98d8810876e0edcf2 Mon Sep 17 00:00:00 2001
From: evamariie <106267274+evamariie@users.noreply.github.com>
Date: Sun, 28 Apr 2024 18:29:53 +0200
Subject: [PATCH 3/3] Third try at black formatting

---
 preprocessing/preprocessing_tutorial.ipynb | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/preprocessing/preprocessing_tutorial.ipynb b/preprocessing/preprocessing_tutorial.ipynb
index 175320b..9344955 100644
--- a/preprocessing/preprocessing_tutorial.ipynb
+++ b/preprocessing/preprocessing_tutorial.ipynb
@@ -228,7 +228,12 @@
     "from brainles_preprocessing.brain_extraction import HDBetExtractor\n",
     "from brainles_preprocessing.modality import Modality\n",
     "from brainles_preprocessing.preprocessor import Preprocessor\n",
-    "from brainles_preprocessing.registration import ANTsRegistrator, NiftyRegRegistrator, eRegRegistrator\n",
+    "from brainles_preprocessing.registration import (\n",
+    "    ANTsRegistrator,\n",
+    "    NiftyRegRegistrator,\n",
+    "    eRegRegistrator,\n",
+    ")\n",
+    "\n",
     "# ANTSRegistrator (default), NiftyRegRegistrator (Linux), eRegRegistrator (experimental)\n",
     "\n",
     "\n",