From e89537915d66d20a67ab8711fe30ab0e687a4be2 Mon Sep 17 00:00:00 2001 From: Woo Seok Jung Date: Mon, 29 Sep 2025 23:20:07 -0500 Subject: [PATCH] fixed broken links --- docs/getting_started.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/getting_started.md b/docs/getting_started.md index 0bfc948..2902f04 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -48,7 +48,7 @@ $ ./fishnet.sh --test ### Execution Here we show the most basic steps for a FISHNET analysis. There are a variety of -configuration options which are detailed in [Configuration](/configuration). +configuration options which are detailed in [Configuration]({% link configuration.md %}). This code chunk assumes that you have an input summary statistics file (comma-separated with columns named "Genes" and "p_vals") and a set of tab-delimited network module files. @@ -117,5 +117,5 @@ results/ The `GO_summaries/` directory lists statistics for the GO overrepresentation analysis. The FISHNET genes for the trait and the network the genes originate from can be found in `summary/__fishnet_genes_.csv` -Read through the [Example](/example) to interpret the output files. +Read through the [Example]({% link example.md %}) to interpret the output files.