Parse a blast2 report ( text format -m 0 ) and return a list of hits identifier in usa format. Beware the output of blast can change according of options used to index your databanks (formatdb). In these conditions blast2seqids can fail to parse blast output.
INSTALLATION from distribution
- Uncompress and untar the package:
tar -xzf blast2seqids-x.x.tar.gz
go to blast2seqids directory
build and install
python setup.py build python setup.py test -vv python setup.py install
to see all installation options "python setup.py --help"
INSTALLATION from repository
clone this github repository
git clone https://github.com/bneron/blast2seqids/
got to INSTALLATION from distribution set 2.
blast2usa was developped at the "Institut Pasteur" in the "Projects and Developpemnt in Bioinformatics" group and is distributed under BSD 3-Clause Please refer to the LICENSE document.