[Main]
seed=632741178
phase=0
max_processors=8
dataset_id=RL
output_directory=out
temp_directory=/tmp
gsa=True
pooled_gsa=True
anonymous=True
compress=1

[ReadSimulator]
readsim=tools/art_illumina-2.3.6/art_illumina
error_profiles=tools/art_illumina-2.3.6/profiles
samtools=../Simulation_Env_py27/bin/samtools
profile=mbarc
size=2
type=art
fragments_size_mean=270
fragment_size_standard_deviation=27

[CommunityDesign]
distribution_file_paths=[MY PARENT DIR]/data/sims/low_coverage/abundance0.tsv
ncbi_taxdump=tools/ncbi-taxonomy_20210322.tar.gz
strain_simulation_template=scripts/StrainSimulationWrapper/sgEvolver/simulation_dir
number_of_samples=1

[community0]
metadata=defaults/new_metadata.tsv
id_to_genome_file=defaults/new_genome_to_id.tsv
id_to_gff_file=
genomes_total=150
genomes_real=150
max_strains_per_otu=1
ratio=1
mode=differential
log_mu=1
log_sigma=2
gauss_mu=1
gauss_sigma=1
view=False