From 62e3420d7caf3545b4cd65dd43d766962a22cd29 Mon Sep 17 00:00:00 2001 From: skchronicles Date: Thu, 18 Oct 2018 14:05:49 -0400 Subject: [PATCH] Export RSTUDIO_PANDOC --- Results-template/Scripts/pcacall.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Results-template/Scripts/pcacall.R b/Results-template/Scripts/pcacall.R index 5c407b3..516f75c 100755 --- a/Results-template/Scripts/pcacall.R +++ b/Results-template/Scripts/pcacall.R @@ -3,7 +3,7 @@ args <- commandArgs(trailingOnly = TRUE) DIR <- args[1] outHtml <- args[2] -# Sys.setenv(RSTUDIO_PANDOC="/Applications/RStudio.app/Contents/MacOS/pandoc") +Sys.setenv(RSTUDIO_PANDOC="/usr/local/apps/rstudio/rstudio-1.1.447/bin/pandoc/") setwd(DIR) # new rmarkdown::render("PcaReport.Rmd",output_file=outHtml, params = list( folder = args[1],