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system picks up wrong pip when building ipython and tornado #269

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aashish24 opened this issue Sep 6, 2013 · 9 comments
Closed

system picks up wrong pip when building ipython and tornado #269

aashish24 opened this issue Sep 6, 2013 · 9 comments
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@aashish24
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@aashish24 aashish24 commented Sep 6, 2013

73%] Performing install step for 'IPYTHON'
CMake Error at /Users/aashish/tools/uvcdat/build/IPYTHON-prefix/src/IPYTHON-stamp/IPYTHON-install.cmake:56 (message):
CTEST_FULL_OUTPUT

Command failed: 2
'env' 'DYLD_LIBRARY_PATH=/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11:/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11:/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11:/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11:/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11:/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11:/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11:/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11:/Users/aashish/tools/uvcdat/install/lib:/Users/aashish/tools/uvcdat/install/Externals/lib:/Users/aashish/tools/uvcdat/install/Externals/lib/paraview-3.11: -bind_at_load -mmacosx-version-min=10.8 -bind_at_load -mmacosx-version-min=10.8 -bind_at_load -mmacosx-version-min=10.8 -bind_at_load -mmacosx-version-min=10.8 -bind_at_load -mmacosx-version-min=10.8 -bind_at_load -mmacosx-version-min=10.8 -bind_at_load -mmacosx-version-min=10.8 -bind_at_load -mmacosx-version-min=10.8 -bind_at_load -mmacosx-version-min=10.8' '/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/bin/pip' 'install' 'ipython==0.13'
From /Users/aashish/tools/uvcdat/build/IPYTHON-prefix/src/IPYTHON-stamp/IPYTHON-install-out.log


Downloading/unpacking ipython==0.13

Running setup.py egg_info for package ipython
  running egg_info

  warning: no files found matching 'setup2.py'
  warning: no files found matching 'setup3.py'
  no previously-included directories found matching 'IPython/deathrow'
  no previously-included directories found matching 'IPython/external/js'
  no previously-included directories found matching 'IPython/frontend/html/notebook/static/mathjax'
  warning: no files found matching 'IPython/.git_commit_info.ini'
  warning: no previously-included files found matching 'docs/#*'
  warning: no previously-included files found matching 'docs/man/*.1.gz'
  no previously-included directories found matching 'docs/attic'
  no previously-included directories found matching 'docs/build'
  no previously-included directories found matching 'docs/gh-pages'
  no previously-included directories found matching 'docs/dist'
  warning: no previously-included files matching '*~' found anywhere in distribution
  warning: no previously-included files matching '*.flc' found anywhere in distribution
  warning: no previously-included files matching '*.pyo' found anywhere in distribution
  warning: no previously-included files matching '.dircopy.log' found anywhere in distribution

Installing collected packages: ipython

Found existing installation: ipython 0.13.1
  Uninstalling ipython:

Exception:

Traceback (most recent call last):

File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/basecommand.py", line 139, in main
  status = self.run(options, args)
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/commands/install.py", line 271, in run
  requirement_set.install(install_options, global_options, root=options.root_path)
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/req.py", line 1181, in install
  requirement.uninstall(auto_confirm=True)
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/req.py", line 495, in uninstall
  paths_to_remove.remove(auto_confirm)
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/req.py", line 1518, in remove
  renames(path, new_path)
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/util.py", line 293, in renames
  shutil.move(old, new)
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 299, in move
  rmtree(src)
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 247, in rmtree
  rmtree(fullname, ignore_errors, onerror)
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 252, in rmtree
  onerror(os.remove, fullname, sys.exc_info())
File "/Users/aashish/tools/uvcdat/install/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 250, in rmtree
  os.remove(fullname)

OSError: [Errno 13] Permission denied:
'/Library/Python/2.7/site-packages/ipython-0.13.1-py2.7.egg/EGG-INFO/dependency_links.txt'

Storing complete log in /Users/aashish/.pip/pip.log


From /Users/aashish/tools/uvcdat/build/IPYTHON-prefix/src/IPYTHON-stamp/IPYTHON-install-err.log



make[2]: *** [IPYTHON-prefix/src/IPYTHON-stamp/IPYTHON-install] Error 1
make[1]: *** [CMakeFiles/IPYTHON.dir/all] Error 2
make: *** [all] Error 2

@ghost ghost assigned doutriaux1 Sep 6, 2013
@aashish24
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@aashish24 aashish24 commented Sep 6, 2013

Charles, you should be able to reproduce this if you install pip and ipython. This not critical as I can live with it for now but we need to fix this if this is not fixed already.

@doutriaux1
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@doutriaux1 doutriaux1 commented Sep 6, 2013

i might have installed pip only. Will try again

@doutriaux1
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@doutriaux1 doutriaux1 commented Oct 21, 2013

can't reproduce. Closing

@doutriaux1 doutriaux1 closed this Oct 21, 2013
@aashish24 aashish24 reopened this Oct 21, 2013
@aashish24
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@aashish24 aashish24 commented Oct 21, 2013

I am able to reproduce it on my system. Could you please upload the ipython and tornado tarballs so that we can build them from source like we discussed?

@aashish24
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@aashish24 aashish24 commented Oct 21, 2013

make sure you install pip, ipython and tornado on your system.

@doutriaux1
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@doutriaux1 doutriaux1 commented Oct 21, 2013

They already are uploaded. We need them for offline build.

@aashish24
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@aashish24 aashish24 commented Oct 22, 2013

Cool!.. you are awesome Charles. Can you send me the URL for these? Can you browse the LLNL directory?

@dakoop
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@dakoop dakoop commented Nov 26, 2013

This is basically the same as Issue #341.

@doutriaux1
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@doutriaux1 doutriaux1 commented Mar 2, 2015

@aashish24 still true?

@doutriaux1 doutriaux1 added this to the 2.3 milestone Mar 2, 2015
@doutriaux1 doutriaux1 assigned aashish24 and unassigned doutriaux1 Mar 2, 2015
@doutriaux1 doutriaux1 closed this Sep 2, 2015
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