On Mac Udunits fails because of flex not found #733
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I didn't try yet. I am waiting for Aashish to give the all clear. From: potter2 <notifications@github.commailto:notifications@github.com> Something isn't working now I can't compile. Anybody else having this problem? CONFIGURE_ARGS IS configure: error: cannot find output from flex; giving up Config Errors detected: CMake Error at Error in config make[2]: *** [udunits2-prefix/src/udunits2-stamp/udunits2-configure] Error 1 — |
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Looks like you are running into flex error issue. |
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@doutriaux1 Does CMOR really needs UDUNITS? Why not we use cdtime? Just curious |
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@doutriaux1 Also, how did you install flex on your system |
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Yes, CMOR needs UDUNITS, I would say if this is holding up progress we droop it. CMOR could be added later. I thought it was a no brainer to add CMOR back in, but maybe not. Dean? Gerald (Jerry) Potter From: Aashish Chaudhary <notifications@github.commailto:notifications@github.com> @doutriaux1https://github.com/doutriaux1 Does CMOR really needs UDUNITS? Why not we use cdtime? Just curious — |
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CMOR is fine, but its just that its using udunits (and not cdtime), not sure why (may be historical reasons). The issue you have posted, I have realized on the travis dashboard as well. I don't know enough about flex at the moment but can look into it afterwards. |
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As I understand it, UDUNITS is needed for the units conversions done in CMOR. But again, CMOR is not needed for UVCDAT to work properly. I asked and I think Dean asked that it be put pack in. Gerald (Jerry) Potter From: Aashish Chaudhary <notifications@github.commailto:notifications@github.com> CMOR is fine, but its just that its using udunits (and not cdtime), not sure why (may be historical reasons). The issue you have posted, I have realized on the travis dashboard as well. I don't know enough about flex at the moment but can look into it afterwards. — |
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Yes, it needs to say. It is not a problem and not big. Aashish was just asking a question. The holdup for the release are the many bugs in UV-CDAT. We have been working on the vector and animation bugs for a long time and as we continue to use UV-CDAT, more bugs coming up and being squashed. -Dean From: potter2 <notifications@github.commailto:notifications@github.com> As I understand it, UDUNITS is needed for the units conversions done in CMOR. But again, CMOR is not needed for UVCDAT to work properly. I asked and I think Dean asked that it be put pack in. Gerald (Jerry) Potter From: Aashish Chaudhary <notifications@github.commailto:notifications@github.commailto:notifications@github.com> CMOR is fine, but its just that its using udunits (and not cdtime), not sure why (may be historical reasons). The issue you have posted, I have realized on the travis dashboard as well. I don't know enough about flex at the moment but can look into it afterwards. — — |
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Dean, Jerry Gerald (Jerry) Potter From: "Dean N. Williams" <notifications@github.commailto:notifications@github.com> Yes, it needs to say. It is not a problem and not big. Aashish was just asking a question. The holdup for the release are the many bugs in UV-CDAT. We have been working on the vector and animation bugs for a long time and as we continue to use UV-CDAT, more bugs coming up and being squashed. -Dean From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.com> As I understand it, UDUNITS is needed for the units conversions done in CMOR. But again, CMOR is not needed for UVCDAT to work properly. I asked and I think Dean asked that it be put pack in. Gerald (Jerry) Potter From: Aashish Chaudhary <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> CMOR is fine, but its just that its using udunits (and not cdtime), not sure why (may be historical reasons). The issue you have posted, I have realized on the travis dashboard as well. I don't know enough about flex at the moment but can look into it afterwards. — — — |
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:-( Sad… Thanks for the clarification. From: potter2 <notifications@github.commailto:notifications@github.com> Dean, Jerry Gerald (Jerry) Potter From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.com> Yes, it needs to say. It is not a problem and not big. Aashish was just asking a question. The holdup for the release are the many bugs in UV-CDAT. We have been working on the vector and animation bugs for a long time and as we continue to use UV-CDAT, more bugs coming up and being squashed. -Dean From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> As I understand it, UDUNITS is needed for the units conversions done in CMOR. But again, CMOR is not needed for UVCDAT to work properly. I asked and I think Dean asked that it be put pack in. Gerald (Jerry) Potter From: Aashish Chaudhary <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> CMOR is fine, but its just that its using udunits (and not cdtime), not sure why (may be historical reasons). The issue you have posted, I have realized on the travis dashboard as well. I don't know enough about flex at the moment but can look into it afterwards. — — — — |
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Cmor RELLY does need it BUT it is now part of netcdf we could try to switch the build of udunits as part of netcdf. Also genutil needs it. It is a VERY VERY VERY important library. I’m guessing Jeff is also using it in some way in the diagnostics (the lcmdi-metrics project is using it) C. From: Aashish Chaudhary <notifications@github.commailto:notifications@github.com> @doutriaux1https://github.com/doutriaux1 Does CMOR really needs UDUNITS? Why not we use cdtime? Just curious — |
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nope it is whatever came with my mac. but i beleive homebrew installs a new one. |
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@aashish24 cditme only deals with time dimensions, cmor is actually the c code of cdtime for time units. udunits deals with ANY units length/volume/pressure, etc.... |
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@aashish24 please try to turn off udunits build and enable it from netcdf this might help. |
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Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — |
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We are waiting for David L. and Charles to give the okay to rebuild. How close are we? I know that Jeff gave the okay on the vectors. -Dean From: potter2 <notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — |
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Dean, Just merged the vectors fix, go ahead on your end. But nothing as been done for the flex. Jerry, will try my suggestion now and will ask you test a branch ok? C. From: "Dean N. Williams" <notifications@github.commailto:notifications@github.com> We are waiting for David L. and Charles to give the okay to rebuild. How close are we? I know that Jeff gave the okay on the vectors. -Dean From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — |
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Okay, thanks! I will rebuild now! :-) From: Charles <notifications@github.commailto:notifications@github.com> Dean, Just merged the vectors fix, go ahead on your end. But nothing as been done for the flex. Jerry, will try my suggestion now and will ask you test a branch ok? C. From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.com> We are waiting for David L. and Charles to give the okay to rebuild. How close are we? I know that Jeff gave the okay on the vectors. -Dean From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — — |
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I don’t get what I am supposed to do. I can’t fix the flex issue - can I? Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.com> Dean, Just merged the vectors fix, go ahead on your end. But nothing as been done for the flex. Jerry, will try my suggestion now and will ask you test a branch ok? C. From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.com> We are waiting for David L. and Charles to give the okay to rebuild. How close are we? I know that Jeff gave the okay on the vectors. -Dean From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — — |
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This appears to be an OSX 10.9 issue as I am able to build master without problem on 10.8.5. From: potter2 <notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — |
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Just built the UV-CDAT from master. I am getting old vtk errors that were cleared up a while back. Did everything get into master?! [naomi 6] ~/work > uvcdat ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 2014-10-03 15:41:15.031 Python[26228:f07] invalid drawable ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 From: Thomas Maxwell <notifications@github.commailto:notifications@github.com> This appears to be an OSX 10.9 issue as I am able to build master without problem on 10.8.5. From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — |
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What are you running? Vectors? From: "Dean N. Williams" <notifications@github.commailto:notifications@github.com> Just built the UV-CDAT from master. I am getting old vtk errors that were cleared up a while back. Did everything get into master?! [naomi 6] ~/work > uvcdat ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 2014-10-03 15:41:15.031 Python[26228:f07] invalid drawable ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 From: Thomas Maxwell <notifications@github.commailto:notifications@github.commailto:notifications@github.com> This appears to be an OSX 10.9 issue as I am able to build master without problem on 10.8.5. From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — — |
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I just typed in uvcdat at the prompt and plotted box fill in the GUI. From: Charles <notifications@github.commailto:notifications@github.com> What are you running? Vectors? From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.com> Just built the UV-CDAT from master. I am getting old vtk errors that were cleared up a while back. Did everything get into master?! [naomi 6] ~/work > uvcdat ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 2014-10-03 15:41:15.031 Python[26228:f07] invalid drawable ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 From: Thomas Maxwell <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> This appears to be an OSX 10.9 issue as I am able to build master without problem on 10.8.5. From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — — — |
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Yes I can confirm I see them too from the GUI. C. From: "Dean N. Williams" <notifications@github.commailto:notifications@github.com> I just typed in uvcdat at the prompt and plotted box fill in the GUI. From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.com> What are you running? Vectors? From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Just built the UV-CDAT from master. I am getting old vtk errors that were cleared up a while back. Did everything get into master?! [naomi 6] ~/work > uvcdat ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 2014-10-03 15:41:15.031 Python[26228:f07] invalid drawable ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 From: Thomas Maxwell <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> This appears to be an OSX 10.9 issue as I am able to build master without problem on 10.8.5. From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — — — — |
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Just making a note that this may be another example that bug fixes are not getting in (and/or remaining in) the master repository. Running CTEST –j4 –D Experimental now… From: Charles <notifications@github.commailto:notifications@github.com> Yes I can confirm I see them too from the GUI. C. From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.com> I just typed in uvcdat at the prompt and plotted box fill in the GUI. From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> What are you running? Vectors? From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Just built the UV-CDAT from master. I am getting old vtk errors that were cleared up a while back. Did everything get into master?! [naomi 6] ~/work > uvcdat ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 2014-10-03 15:41:15.031 Python[26228:f07] invalid drawable ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 From: Thomas Maxwell <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> This appears to be an OSX 10.9 issue as I am able to build master without problem on 10.8.5. From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — — — — — |
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Just finished completing the CTEST: http://open.cdash.org/index.php?project=UV-CDAT&display=project 4 test persists: 99% tests passed, 4 tests failed out of 319 Total Test time (real) = 557.84 sec The following tests FAILED: Where are we on removing these failures? From: , Dean Williams <williams13@llnl.govmailto:williams13@llnl.gov> Just making a note that this may be another example that bug fixes are not getting in (and/or remaining in) the master repository. Running CTEST –j4 –D Experimental now… From: Charles <notifications@github.commailto:notifications@github.com> Yes I can confirm I see them too from the GUI. C. From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.com> I just typed in uvcdat at the prompt and plotted box fill in the GUI. From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> What are you running? Vectors? From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Just built the UV-CDAT from master. I am getting old vtk errors that were cleared up a while back. Did everything get into master?! [naomi 6] ~/work > uvcdat ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 2014-10-03 15:41:15.031 Python[26228:f07] invalid drawable ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 From: Thomas Maxwell <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> This appears to be an OSX 10.9 issue as I am able to build master without problem on 10.8.5. From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — — — — — |
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What mac os are you using? Gerald (Jerry) Potter From: "Dean N. Williams" <notifications@github.commailto:notifications@github.com> Just finished completing the CTEST: http://open.cdash.org/index.php?project=UV-CDAT&display=project 4 test persists: 99% tests passed, 4 tests failed out of 319 Total Test time (real) = 557.84 sec The following tests FAILED: Where are we on removing these failures? From: , Dean Williams <williams13@llnl.govmailto:williams13@llnl.govmailto:williams13@llnl.gov> Just making a note that this may be another example that bug fixes are not getting in (and/or remaining in) the master repository. Running CTEST –j4 –D Experimental now… From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.com> Yes I can confirm I see them too from the GUI. C. From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> I just typed in uvcdat at the prompt and plotted box fill in the GUI. From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> What are you running? Vectors? From: "Dean N. Williams" <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Just built the UV-CDAT from master. I am getting old vtk errors that were cleared up a while back. Did everything get into master?! [naomi 6] ~/work > uvcdat ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 2014-10-03 15:41:15.031 Python[26228:f07] invalid drawable ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLRenderer.cxx, line 1202 ERROR: In /Users/williams13/work/uvcdatb/build_uvcdat/build/VTK/Rendering/OpenGL/vtkOpenGLImageSliceMapper.cxx, line 574 From: Thomas Maxwell <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> This appears to be an OSX 10.9 issue as I am able to build master without problem on 10.8.5. From: potter2 <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> Aashish, Thanks, Gerald (Jerry) Potter From: Charles <notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.commailto:notifications@github.com> @aashish24https://github.com/aashish24 please try to turn off udunits build and enable it from netcdf this might help. — — — — — — — — |
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@potter2 I have a new branch with the newest udunits2 this might help. |
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https://travis-ci.org/UV-CDAT/uvcdat/jobs/37019704 the issue still exists. |
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This is not a high priority. We need to focus on getting UV-CDAT out. From: Aashish Chaudhary <notifications@github.commailto:notifications@github.com> — |
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Sure. But keeping the issue open so that we won't forget about it. |
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All just wanted to clarify few things: -- ccmake is just the GUI for cmake. |
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Let's see if udunits is used for the diagnostics. If it isn't then let's remove it and CMOR… We have got to get UV-CDAT out!!! From: Aashish Chaudhary <notifications@github.commailto:notifications@github.com> All just wanted to clarify few things: ccmake is just the GUI for cmake. — |
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CDAT needs udunits. |
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@doutriaux1 so CDAT uses both udunits and cdtime? I guess in that case it is hard-dependency of CDAT |
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yes it is again udunits handles ANY dimensions, cdtime handles (better but only) time dimensions. |
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I haven't seen a complete error log outside of travis, so this might be a different issue than what others are seeing, but the culprit is udunits' configure script and the flex output. The configure script is attempting to run Since it can't find lex.yy.c or lexyy.c, it bails out with an error. Without having access to the travis environment it's hard to know any more. Updating the udunits version sounds like the best route forward in case they've fixed this (I notice they're up to 2.2.17, we're running 2.1.24). |
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Is the OpenGL issue related to this thread? The issue on github (#733) is getting difficult to follow... It also seems odd that cmake vs ccmake would make any difference, since the error is in an autoconf configure file of a subproject. Are you certain that cmake/ccmake were run in the same environment with the same cache parameters? |
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new udunits is suffering from the same issue: Does it really need flex? Can we disable this test (update this file as post-download process?) for now |
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@aashish24 that sounds reasonable, maybe only disabling for Mac where we know we have flex anyway. |
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@dlonie that is fixed correct? please reopen if not. |
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It is. I patched the configure script for udunits2 to remove the check for the flex output file on mac, since the project doesn't use it anyway. |
Something isn't working now I can't compile. Anybody else having this problem?
CONFIGURE_ARGS IS
configure: error: cannot find output from flex; giving up
Config Errors detected:
CMake Error at
/Users/potter/uvcdat/build/CMake/cdat_configure_step.cmake:15 (message):
make[2]: *** [udunits2-prefix/src/udunits2-stamp/udunits2-configure] Error 1
make[1]: *** [CMakeFiles/udunits2.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
-- png configur
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