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issue1538 durack1 update Cython 0.22.1 to 0.23.3 #1540

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merged 4 commits into from Sep 30, 2015

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durack1 commented Sep 10, 2015

Fix #1538 - Update Cython 0.22.1 to 0.23.1

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durack1 commented Sep 10, 2015

@doutriaux1 on oceanonly it seems there are some test files missing:

303/461 Test #311: vcs_test_hatches_patterns ...............................***Failed    4.11 sec
File "/export/doutriaux1/bots_oceanonly/build/uvcdat-testdata/baselines/vcs/test_vcs_hatches_patterns.png" not found.
312/461 Test #310: vcs_test_isofill_hatches ................................***Failed   12.10 sec
File "/export/doutriaux1/bots_oceanonly/build/uvcdat-testdata/baselines/vcs/test_isofill_hatches.png" not found.
389/461 Test #309: vcs_test_isofill_patterns ...............................***Failed   65.23 sec
File "/export/doutriaux1/bots_oceanonly/build/uvcdat-testdata/baselines/vcs/test_isofill_patterns.png" not found.
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durack1 commented Sep 10, 2015

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durack1 commented Sep 12, 2015

Looks like 0.23.2 just landed to fix an issue on OS X - I'll update the PR..

@durack1 durack1 changed the title from issue1538 durack1 update Cython 0.22.1 to 0.23.1 to issue1538 durack1 update Cython 0.22.1 to 0.23.2 Sep 14, 2015

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durack1 commented Sep 14, 2015

@doutriaux1 is aims4 the buildbot server up and running today?

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doutriaux1 commented Sep 14, 2015

on and off, playing with it. I will resubmit yours. But only the RHs are up at the moment, Mac decided to not let me in...

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durack1 commented Sep 14, 2015

@doutriaux1 the 0.23.2 patch release was specifically created to deal with an OS X issue, so it would certainly be good to test this against the macbot if you can..

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durack1 commented Sep 15, 2015

@doutriaux1 macbot still choking? It also seems the other LLNLbots are also having some problems..

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durack1 commented Sep 16, 2015

@doutriaux1 looks like Xvfb might need a restart on oceanonly - is there a way to trigger a new Xvfb session for each test?

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doutriaux1 commented Sep 16, 2015

@durack1 I restarted Xfvb, I 'm afraid some bad PR went in....

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doutriaux1 commented Sep 16, 2015

and no they're not choking I just went to look, just seem to be taking forever...

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doutriaux1 commented Sep 16, 2015

@aashish24 I just double check a bunch of tests are now failing on RH6... Checking Ubuntu as well...

These used to work, I'm going to go back slowly and see last commit that worked... I think some PR went in too hastily.

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jbeezley commented Sep 16, 2015

According to cdash 77c1c61bece had only 1 failure on ocean only. The only commits merged after that are the following:

$ git cherry -v 77c1c61bece origin/master
+ 7dcafcd24f33f48068ebb6804ee59dc456a7d6ab Dramatically cuts down on the number of renderers used per plot
+ f7cf54cdc0f4f7d41ae4165ea3c48925df656532 Fixed missing background/vtk errors for click_info, added a test
+ 616cf4d61589739c3403d4b4e3264ba9318928e3 Update isofillpipeline.py
+ 91316fff34bc4a1b24d36d43c8809db39ed7e0fe Removed extra tab to trigger rebuild
+ 3ff13b4c8834941ce3abf0b823e262a6cdccdae0 Put extra tab back to resolve merge conflict
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doutriaux1 commented Sep 16, 2015

@jbeezley yes i went way way back and it still shows up the same errors whereas crunchy is stable. So something happened to oceanonly. That's good in the sense that it means our code is not broken!

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durack1 commented Sep 16, 2015

@doutriaux1 and using my interactive session (and a fresh build from the master branch along with issue_402) these are the errors I also get:

91% tests passed, 40 tests failed out of 458

Total Test time (real) = 249.77 sec

The following tests FAILED:
         42 - vcs_no_xtra_elts (Failed)
         43 - vcs_line_duplicate_points_fix (Failed)
         46 - vcs_test_antialiasing (Failed)
         94 - vcs_test_markers (Failed)
         95 - vcs_test_star_triangle_markers (Failed)
        104 - test_vcs_box_custom_as_def_vistrails_exts (Failed)
        118 - vcs_test_bad_time_units (Failed)
        119 - vcs_test_plot_file_varible (Failed)
        269 - vcs_test_basic_meshfill_0_proj_NH (Failed)
        273 - vcs_test_basic_meshfill_0_proj_NH_gm (Failed)
        274 - vcs_test_basic_meshfill_0_proj_NH_gm_flip (Failed)
        279 - vcs_test_basic_meshfill_-3_proj_NH (Failed)
        283 - vcs_test_basic_meshfill_-3_proj_NH_gm (Failed)
        284 - vcs_test_basic_meshfill_-3_proj_NH_gm_flip (Failed)
        289 - vcs_test_basic_meshfill_aeqd_proj_NH (Failed)
        293 - vcs_test_basic_meshfill_aeqd_proj_NH_gm (Failed)
        294 - vcs_test_basic_meshfill_aeqd_proj_NH_gm_flip (Failed)
        297 - vcs_test_isoline_labels_multi_label_input_types (Failed)
        298 - vcs_test_isoline_labels (Failed)
        299 - vcs_test_isoline_labelskipdistance (Failed)
        300 - vcs_test_isofill_isoline_labels (Failed)
        302 - vcs_test__patterns (Failed)
        314 - vcs_test_close (Failed)
        322 - vcs_test_animate_isoline_text_labels (Failed)
        323 - vcs_test_animate_isoline_text_labels_colored (Failed)
        326 - vcs_test_configurator_click_text (Failed)
        328 - vcs_test_configurator_click_marker (Failed)
        382 - test_vtk_ui_manager_resize (Failed)
        390 - vcs_addons_preview_2x2 (Failed)
        391 - vcs_addons_test_12_plot_one_leg_per_row (Failed)
        392 - vcs_addons_test_12_plot_one_leg_per_row_right (Failed)
        393 - vcs_addons_test_EzTemplate_12_plots_margins_thickness (Failed)
        394 - vcs_addons_test_EzTemplate_12_plots_legd_direction (Failed)
        395 - vcs_addons_test_EzTemplate_12_plots_mix_glb_local (Failed)
        396 - vcs_addons_test_EzTemplate_12_plots_spacing (Failed)
        398 - Hovmoller_volume_test (Failed)
        399 - dv3d_vector_test (Failed)
        400 - dv3d_slider_test (Failed)
        401 - dv3d_volume_test (Failed)
        447 - CDMS_Test_multiple_formats (Failed)
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durack1 commented Sep 16, 2015

@doutriaux1 and what has been upgraded since 20th August 2015 (and some other selected updates dating back to 27th July 2015 - the redhat 6.7 update):

[user@ocean ~]$ rpm -qa --qf '%{INSTALLTIME} %-40{NAME} %{INSTALLTIME:date}\n' | sort -n | cut -d' ' -f2-

xorg-x11-fonts-100dpi                    Mon 27 Jul 2015 09:21:12 AM PDT                                             

Red_Hat_Enterprise_Linux-Release_Notes-6-en-US Mon 27 Jul 2015 09:21:16 AM PDT                                       
xorg-x11-fonts-ISO8859-1-100dpi          Mon 27 Jul 2015 09:21:16 AM PDT                                             
xorg-x11-fonts-misc                      Mon 27 Jul 2015 09:21:16 AM PDT                                             

xorg-x11-drv-ati-firmware                Mon 27 Jul 2015 09:21:21 AM PDT                                             

libX11                                   Mon 27 Jul 2015 09:21:24 AM PDT                                             

mesa-dri-drivers                         Mon 27 Jul 2015 09:21:28 AM PDT
mesa-libGL                               Mon 27 Jul 2015 09:21:28 AM PDT
mesa-libGLU                              Mon 27 Jul 2015 09:21:28 AM PDT

flash-plugin                             Thu 20 Aug 2015 01:42:03 PM PDT
httpd-tools                              Thu 27 Aug 2015 11:02:36 AM PDT
httpd                                    Thu 27 Aug 2015 11:02:37 AM PDT
thunderbird                              Thu 27 Aug 2015 11:02:45 AM PDT
firefox                                  Sat 29 Aug 2015 11:49:15 AM PDT
nss-softokn-freebl                       Sun 06 Sep 2015 05:30:08 PM PDT
nss-softokn-freebl-devel                 Sun 06 Sep 2015 05:30:09 PM PDT
nss-softokn                              Sun 06 Sep 2015 05:30:09 PM PDT
gdk-pixbuf2                              Sun 06 Sep 2015 05:30:10 PM PDT
bind-libs                                Sun 06 Sep 2015 05:30:12 PM PDT
selinux-policy                           Sun 06 Sep 2015 05:30:13 PM PDT
selinux-policy-targeted                  Sun 06 Sep 2015 05:30:15 PM PDT
bind-utils                               Sun 06 Sep 2015 05:30:37 PM PDT
gdk-pixbuf2-devel                        Sun 06 Sep 2015 05:30:37 PM PDT
libXfont                                 Sun 06 Sep 2015 05:30:38 PM PDT
nss-softokn-devel                        Sun 06 Sep 2015 05:30:38 PM PDT
nss-softokn-freebl                       Sun 06 Sep 2015 05:30:38 PM PDT
nss-softokn                              Sun 06 Sep 2015 05:30:38 PM PDT
spice-server                             Sun 06 Sep 2015 05:30:38 PM PDT
gdk-pixbuf2                              Sun 06 Sep 2015 05:30:39 PM PDT
tk                                       Thu 10 Sep 2015 04:32:15 PM PDT
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doutriaux1 commented Sep 16, 2015

@durack1 I'm at a loss here. crunchy still works and it seems to have been upgraded as well... Trying with MESA now, if that still fails let's go for a reboot...

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durack1 commented Sep 16, 2015

@doutriaux1 yep I think that sounds like a good idea.. I'll poll other users in the interim..

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durack1 commented Sep 17, 2015

@doutriaux1 ocean is rebooted, so can you initialize the bot testing for this PR again please?

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doutriaux1 commented Sep 17, 2015

@durack1 please stop pushing PR for now, we have do let the bots deal with the 2.4 branches first. Thanks

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durack1 commented Sep 17, 2015

@doutriaux1 I'm not touching this.. Just hoping the buildbots can run an accurate test against the PR however..

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jbeezley commented Sep 17, 2015

@doutriaux1 Assuming you haven't changed the tangelo proxy. It builds on push not on PR, so any push to this repository that updates the SHA of any branch will trigger it.

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doutriaux1 commented Sep 17, 2015

yes so that's why I was asking @durack1 to try to refrain to trigger any rebuild until after the release because we push more frequently when near the release and we need to see the results as fast as possible.

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durack1 commented Sep 19, 2015

@doutriaux1 looks like there are persistent errors, both with this PR and #1539:

crunchy
The following tests FAILED:
    486 - rpy2_verify_import (Failed)

1538, 1539

and

annie
The following tests FAILED:
    478 - CDMS_Test_multiple_formats (Failed)

1538, 1539

@durack1 durack1 force-pushed the issue1538_durack1_UpdateCython0.22.1To0.23.1 branch from 5f17a01 to 601e6ca Sep 22, 2015

@aashish24 aashish24 force-pushed the master branch from bfe2642 to 3283d6c Sep 22, 2015

@durack1 durack1 referenced this pull request Sep 22, 2015

Merged

Issue 1347 use screensize #1563

@durack1 durack1 force-pushed the issue1538_durack1_UpdateCython0.22.1To0.23.1 branch from 601e6ca to ff979a9 Sep 23, 2015

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durack1 commented Sep 23, 2015

@doutriaux1 looks like the samevcs_test_click_info graphics issue on garant is also happening with this PR - I just rebased, so it's a problem in master

The segfault in CDMS_Test_multiple_formats is also back on annie

@durack1 durack1 referenced this pull request Sep 24, 2015

Merged

Fix vector plots #1560

@durack1 durack1 changed the title from issue1538 durack1 update Cython 0.22.1 to 0.23.2 to issue1538 durack1 update Cython 0.22.1 to 0.23.3 Sep 29, 2015

@durack1 durack1 force-pushed the issue1538_durack1_UpdateCython0.22.1To0.23.1 branch from c542046 to ceaffae Sep 29, 2015

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durack1 commented Sep 29, 2015

@doutriaux1 @chaosphere2112 at least travis doesn't discriminate my PR queue priority.. Look at those shiny green ticks..

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chaosphere2112 commented Sep 29, 2015

@durack1 All part of @doutriaux1's cunning plan to slowly drive you mad 😈

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doutriaux1 commented Sep 29, 2015

why slowly? Oh yes it's more fun to watch the process slowly working.

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durack1 commented Sep 29, 2015

##bot @doutriaux1 says I'm not worthy##

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durack1 commented Sep 30, 2015

@doutriaux1 @chaosphere2112 have the lower class PR citizens queues started running yet? j=0.01

doutriaux1 added a commit that referenced this pull request Sep 30, 2015

Merge pull request #1540 from UV-CDAT/issue1538_durack1_UpdateCython0…
….22.1To0.23.1

issue1538 durack1 update Cython 0.22.1 to 0.23.3

@doutriaux1 doutriaux1 merged commit 0e497f5 into master Sep 30, 2015

6 of 9 checks passed

cont-int/LLNL/Darwin-Mac 10.10.5 (LEAN) running 'ctest -j4 -D Experimental' (Tue Sep 29 22:22:33 2015)
Details
cont-int/LLNL/Linux-annie Ubuntu 15.04 (FULL/MESA) running 'ctest -j15 -D Experimental' (Tue Sep 29 22:57:11 2015)
Details
continuous-integration/kitware-buildbot/uvcdat-garant-linux-release/ Build done.
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cont-int/LLNL/Darwin-Mac1 10.10.5 (NOGUI) running 'ctest -j4 -D Experimental' (Tue Sep 29 23:20:34 2015)
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cont-int/LLNL/Darwin-Mac2 10.10.5 (FULL) running 'ctest -j4 -D Experimental' (Tue Sep 29 23:43:02 2015)
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cont-int/LLNL/Linux-crunchy RH6 (FULL) running 'ctest -j12 -D Experimental' (Tue Sep 29 22:41:07 2015)
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cont-int/LLNL/Linux-oceanonly RH6 (MESA/NOGUI) running 'ctest -j12 -D Experimental' (Tue Sep 29 22:34:39 2015)
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continuous-integration/travis-ci/pr The Travis CI build passed
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continuous-integration/travis-ci/push The Travis CI build passed
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@doutriaux1 doutriaux1 deleted the issue1538_durack1_UpdateCython0.22.1To0.23.1 branch Sep 30, 2015

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doutriaux1 commented Sep 30, 2015

@durack1 happy now? 😉

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durack1 commented Sep 30, 2015

@doutriaux1 well at least that's one less PR to block up the bot queue..

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