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cdms2.setAutoBounds('off') problem (OK with 'on') #98

jypeter opened this issue Feb 28, 2017 · 2 comments

cdms2.setAutoBounds('off') problem (OK with 'on') #98

jypeter opened this issue Feb 28, 2017 · 2 comments


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@jypeter jypeter commented Feb 28, 2017

@dnadeau4 and @doutriaux1 I'm using 2.8.0 and if I run the script at the end of this issue with the setAutoBounds line commented out, it works fine. But when the line is not commented, I get the following exception:

Processing year 1851 Tue Feb 28 17:23:05 2017
Traceback (most recent call last):
  File "/home/users/jypeter/CDAT/Progs/Devel/carmen/", line 36, in <module>
  File "/home/share/unix_files/cdat/miniconda2/envs/cdatm14/lib/python2.7/site-packages/cdms2/", line 33, in __call__
    return v(*args, **kwargs)
  File "/home/share/unix_files/cdat/miniconda2/envs/cdatm14/lib/python2.7/site-packages/cdms2/", line 162, in __call__
  File "/home/share/unix_files/cdat/miniconda2/envs/cdatm14/lib/python2.7/site-packages/cdms2/", line 176, in unmodified_select
    fetched = result.subRegion(*specifications)
  File "/home/share/unix_files/cdat/miniconda2/envs/cdatm14/lib/python2.7/site-packages/cdms2/", line 931, in subRegion
    b = axis.getBounds(isGeneric) - delta_beg_wrap_dimvalue
TypeError: unsupported operand type(s) for -: 'NoneType' and 'float'

If I specify 'on' instead of 'off', it works fine as well...

Can you check what's wrong? Thanks!

#!/usr/bin/env python

import time
import cdms2

var_name = 't2m'

time_select = slice(0, 1) # First time step
ensemble_select = slice(0, 1) # First member
#ensemble_select = slice(None, None) # ALL members
latitude_range = (22, 70)
longitude_range = (-80, 50)

year_start, year_end = 1851, 1853

download_url = ''
save_path = '/home/scratch01/jypeter'

# Write NetCDF3 Classic
value = 0
cdms2.setNetcdfShuffleFlag(value) ## where value is either 0 or 1
cdms2.setNetcdfDeflateFlag(value) ## where value is either 0 or 1
cdms2.setNetcdfDeflateLevelFlag(value) ## where value is a integer between 0 and 9 included


for year in range(year_start, year_end + 1):
    print "Processing year", year, time.asctime()
    path_in = '%s/%s/' % (download_url, var_name, var_name, year)
    print "  Opening", path_in
    f_in =
    var_dap = f_in(var_name,

    path_out = '%s/' % (save_path, var_name, year)
    f_out =, 'w')
    f_out.history = 'Data extracted by John Doe from %s' % (path_in,)

# The end
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@doutriaux1 doutriaux1 commented Feb 28, 2017

hum... the default is 2 which means no autobounds except for lat/lon

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@dnadeau4 dnadeau4 commented Mar 2, 2017

@jypeter netcdf4 is normal by default, you need to set netcdf3 flags. cdms2.setNetcdf4Flag`

For the autobounds, this seems to be a numpy 1.11 error after the upgrade.

@doutriaux1 doutriaux1 modified the milestone: 3.0 May 5, 2017
@doutriaux1 doutriaux1 assigned dnadeau4 and unassigned dnadeau4 May 5, 2017
@doutriaux1 doutriaux1 modified the milestones: 3.0, 3.1 Mar 29, 2018
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