{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":522592754,"defaultBranch":"master","name":"tostadas","ownerLogin":"CDCgov","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-08-08T14:55:05.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/12104975?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1719240520.0","currentOid":""},"activityList":{"items":[{"before":"c4dada3ee0c65df08e0d6820c415e53a75f2445f","after":null,"ref":"refs/heads/rework_subworkflows","pushedAt":"2024-06-24T14:48:40.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"c0877bf547254733a3594fcf6cef48658b994247","after":null,"ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-06-05T16:17:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"}},{"before":"419f9d9ffc77d5c3011445ca097c241ca5afbf3f","after":"85f17fd52f967bc77c6db7e166f6b6cb44348cdc","ref":"refs/heads/dev","pushedAt":"2024-06-05T16:16:30.000Z","pushType":"pr_merge","commitsCount":16,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"Merge pull request #200 from CDCgov/rsv_vadr_refactor_kao\n\nRsv vadr refactor kao","shortMessageHtmlLink":"Merge pull request #200 from CDCgov/rsv_vadr_refactor_kao"}},{"before":"7d6a71e176f005739b27987fc4ca08e680f02d20","after":"c0877bf547254733a3594fcf6cef48658b994247","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-06-05T15:33:55.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"kyleoconnell-CDC","name":"Kyle O'Connell CDC","path":"/kyleoconnell-CDC","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129424430?s=80&v=4"},"commit":{"message":"updated gff to tbl for output param","shortMessageHtmlLink":"updated gff to tbl for output param"}},{"before":"4948290b102898d4b804a92382b1380a52bfe45b","after":"7d6a71e176f005739b27987fc4ca08e680f02d20","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-30T22:05:26.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"},"commit":{"message":"Merge branch 'rsv_vadr_refactor_kao' of https://github.com/CDCgov/tostadas into rsv_vadr_refactor_kao","shortMessageHtmlLink":"Merge branch 'rsv_vadr_refactor_kao' of https://github.com/CDCgov/tos…"}},{"before":"5054f412979718b0216133cad6685380b25d3f5e","after":"4948290b102898d4b804a92382b1380a52bfe45b","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-30T18:52:51.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"fixed some update submission info","shortMessageHtmlLink":"fixed some update submission info"}},{"before":"92846568dd5773d8710f7d72a9329e14b404ee3e","after":"5054f412979718b0216133cad6685380b25d3f5e","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-23T18:27:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kyleoconnell-CDC","name":"Kyle O'Connell CDC","path":"/kyleoconnell-CDC","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129424430?s=80&v=4"},"commit":{"message":"cleaned up a few params to reduce params needed on command line","shortMessageHtmlLink":"cleaned up a few params to reduce params needed on command line"}},{"before":"1cf8e4b180a2a27ef0340363655af4970d7847a1","after":"92846568dd5773d8710f7d72a9329e14b404ee3e","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-21T21:13:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"fixed mismatch in vadr post cleanup where the vadr outputs werent matching the reads ch in some cases. Used a join on meta.id before running process within vadr subworkflow","shortMessageHtmlLink":"fixed mismatch in vadr post cleanup where the vadr outputs werent mat…"}},{"before":"3de88d7048cbb3ad32281d16b889b6e125a00885","after":"1cf8e4b180a2a27ef0340363655af4970d7847a1","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-21T21:00:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"updated vadr inputs and outputs, tested all other configs. There is a bug with vadr outputs being reformatted to gff that then isnt working with table2asn. We need to recode submission genbank to take tbl instead of gff so that we can use the tbl from vadr directly. I tested this and table2asn likes this file.","shortMessageHtmlLink":"updated vadr inputs and outputs, tested all other configs. There is a…"}},{"before":"9207fb1ca4fc1e1780fc21073844d24972ba4d7f","after":"3de88d7048cbb3ad32281d16b889b6e125a00885","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-21T20:21:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"updated assets","shortMessageHtmlLink":"updated assets"}},{"before":"9ef3622524eaf5888f8e0ac64fcea29e22f2439a","after":"9207fb1ca4fc1e1780fc21073844d24972ba4d7f","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-21T14:02:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"updated test profiles to add rsv, renamed metadata xlsx, removed an extra dir (aspen), added rsv ref data","shortMessageHtmlLink":"updated test profiles to add rsv, renamed metadata xlsx, removed an e…"}},{"before":"0f559d3898c27df5dc26b2307984fd800931a2a6","after":"9ef3622524eaf5888f8e0ac64fcea29e22f2439a","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-17T15:47:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"updated vadr modules","shortMessageHtmlLink":"updated vadr modules"}},{"before":"e7c1574a9fa4e15a9c95a41050baf146fbe5b7c7","after":"0f559d3898c27df5dc26b2307984fd800931a2a6","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-17T13:29:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"fixed vadr to add trimming and updated some paths","shortMessageHtmlLink":"fixed vadr to add trimming and updated some paths"}},{"before":null,"after":"e7c1574a9fa4e15a9c95a41050baf146fbe5b7c7","ref":"refs/heads/rsv_vadr_refactor_kao","pushedAt":"2024-05-16T15:53:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"made edits to allow rsv for vadr","shortMessageHtmlLink":"made edits to allow rsv for vadr"}},{"before":null,"after":"c4dada3ee0c65df08e0d6820c415e53a75f2445f","ref":"refs/heads/rework_subworkflows","pushedAt":"2024-05-10T19:22:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"kyleoconnell","name":"Kyle O'Connell","path":"/kyleoconnell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84786080?s=80&v=4"},"commit":{"message":"moved update submission to main workflow","shortMessageHtmlLink":"moved update submission to main workflow"}},{"before":null,"after":"ad767a441de247562689fc353b329dccdd2fb95c","ref":"refs/heads/rsv_vadr_update","pushedAt":"2024-05-02T17:41:48.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"kyleoconnell-CDC","name":"Kyle O'Connell CDC","path":"/kyleoconnell-CDC","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129424430?s=80&v=4"},"commit":{"message":"Merge pull request #188 from CDCgov/update-container-ick4\n\nUpdate container ick4","shortMessageHtmlLink":"Merge pull request #188 from CDCgov/update-container-ick4"}},{"before":"9835fc1d1ea2b7af14e5835339f48ae9aa83a897","after":null,"ref":"refs/heads/samplesheet_check_metadata_ufp0","pushedAt":"2024-04-12T18:19:05.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"234f005b0ec5b693127d4ea389665eb5ae8286a5","after":null,"ref":"refs/heads/macoven_nf_validation","pushedAt":"2024-04-12T15:22:38.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"750cece8294b4475c8bc50e798703122fc9b352b","after":null,"ref":"refs/heads/submission_nf_refactor","pushedAt":"2024-04-12T15:21:51.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"6ce93e3190b4a52632643dc83c7c2f8590ff75d9","after":null,"ref":"refs/heads/annotation_fasta_patch_kao","pushedAt":"2024-04-12T15:20:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"fa3248c04ec99533f34739ad1333c4ca9ab869df","after":null,"ref":"refs/heads/nf_validation","pushedAt":"2024-04-12T15:05:23.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"c46b04ab3d1014b13b9cc2eda08dbf2437b21d68","after":null,"ref":"refs/heads/96-modules-config-refactor","pushedAt":"2024-04-12T15:02:23.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"3e13ec3a94432bc69d77ca3a9b0c6c0ea4532bfd","after":null,"ref":"refs/heads/96-config-update-kao","pushedAt":"2024-04-12T15:02:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"efba7222e1d6e6786a1e6d6c9dc76511b80a8138","after":null,"ref":"refs/heads/utility_function_patch_ufp0","pushedAt":"2024-04-12T15:01:11.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"af898e4f9185ce94260fa8745d269d8e16a142d3","after":null,"ref":"refs/heads/seqera_patch_kao","pushedAt":"2024-04-12T15:00:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"9fa3cf8a2e4ee2006b2726572e2ec7e53a545bc7","after":null,"ref":"refs/heads/update-container-ick4","pushedAt":"2024-04-12T15:00:27.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"758b7833a8437c06e6b891c4e4380a707bb1d62a","after":null,"ref":"refs/heads/dev-patch2-ick4","pushedAt":"2024-04-12T15:00:24.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"7d7d4be0f2afe97f069fc07a64ec3846c195fc1d","after":null,"ref":"refs/heads/date-patch-ick4","pushedAt":"2024-04-12T15:00:21.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"}},{"before":"4b66457ff0919cd35b30ec73f8d3182712ebd2c8","after":"419f9d9ffc77d5c3011445ca097c241ca5afbf3f","ref":"refs/heads/dev","pushedAt":"2024-04-12T14:59:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessicarowell","name":"Jessica Rowell","path":"/jessicarowell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25388866?s=80&v=4"},"commit":{"message":"remove .view() command","shortMessageHtmlLink":"remove .view() command"}},{"before":null,"after":"56fe0915976eb97d2b70d942a226e1506c382706","ref":"refs/heads/nf-validation-madeline","pushedAt":"2024-04-11T13:23:07.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"macoven-del","name":null,"path":"/macoven-del","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/97634360?s=80&v=4"},"commit":{"message":"Merge pull request #196 from CDCgov/patch-concatgffs-ick4\n\nPatch concatgffs ick4","shortMessageHtmlLink":"Merge pull request #196 from CDCgov/patch-concatgffs-ick4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEbaPp-QA","startCursor":null,"endCursor":null}},"title":"Activity · CDCgov/tostadas"}