• Tools for handling Unique Molecular Identifiers in NGS data sets

    Python 142 87 MIT Updated Aug 13, 2018
  • CGAT - Computational Genomics Analysis Tools

    Python 100 58 Updated Jul 20, 2018
  • Collection of CGAT NGS Pipelines

    Python 30 19 MIT Updated Jul 20, 2018
  • Conda recipes for the bioconda channel.

    Shell 776 Updated Jul 19, 2018
  • Further development of the CGATCore has moved to a new repository. Please see

    Python 3 BSD-3-Clause Updated Jun 14, 2018
  • Test scripts and configuration for Jenkins CI testing of workflows

    Python 1 MIT Updated Jun 8, 2018
  • ipython Notebooks

    Jupyter Notebook Updated May 18, 2018
  • tensorflow adaptation of DanQ

    Jupyter Notebook 1 Updated Dec 12, 2017
  • Fork of the training material for the course: "Python for HPC" originally created by http://www.archer.ac.uk/ and adapted by http://www.arc.ox.ac.uk/

    Jupyter Notebook 1 1 Updated Dec 4, 2017
  • Scripts for building the genserv web server

    Python MIT Updated Apr 10, 2017
  • Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication

    Jupyter Notebook 5 3 Updated Dec 21, 2016
  • iCLIP analysis pipeline created for project 028

    Python 1 Updated Nov 3, 2016
  • build and test recipes for conda

    Shell 362 Updated May 13, 2016
  • Scripts for proj029

    Python 2 BSD-3-Clause Updated Mar 9, 2016
  • Dashboard to monitor projects and software development within the CGAT group (www.cgat.org)

    JavaScript 2 53 MIT Updated Jan 12, 2016
  • Comparative genomics code for Optic, Gpipe and other projects.

    Python MIT Updated Sep 22, 2015
  • A script to display genomic data

    Python 1 Updated Apr 16, 2015
  • A parser for Google Scholar, written in Python

    Python 1 592 Updated Jan 9, 2015