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cidc-documentation

CLI instructions and Ingestion workflow documentation regarding the following:

Assays

  • ATACseq (Fastq)
  • ctDNA
  • CyTOF
  • ELISA
  • H & E
  • IHC
  • MIBI
  • Microbiome
  • MiF
  • Olink
  • RNAseq (Fastq/Bam)
  • TCRseq (Fastq/Adaptive)
  • WES (Fastq/Bam)

Analyses

  • ATACseq
  • CyTOF
  • RNAseq
  • TCRseq
  • WES (Tumor-Normal/Tumor-only)

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