GRASPER v0.1.1

Minor updates

• no longer need to supply .medMAD file. This is automatically generated by "depth" command of grasper ( named *.medMAD_GRASPER ). You can still set your own medMAD values by setting MEDMADFILE field in the config file.
• no longer need to set GENOMELEN manually in the configuration file. The length information loaded from *.len file generated by RepGraph (v0.1.1 or later).

You can download a test data set from the initial release:

https://github.com/COL-IU/GRASPER/releases/download/v0.1.0/20Insertions_per_element_1TH_pIRS_20X_11_90_470_1.fq.gz

https://github.com/COL-IU/GRASPER/releases/download/v0.1.0/20Insertions_per_element_1TH_pIRS_20X_11_90_470_2.fq.gz

GRASPER v0.1.0

This is the first release!

1. Download the source and build GRASPER according to the included README file.
2. Download the attached test_data (simulated data. IS1, IS5, and IS186 were randomly inserted (20 times each )into E. coli genome (NC_000913.2) first. Then the synthetic data were generated (20x coverage) using pIRS (Hu et al., 2102).
3. Move the test data to "test_data" under GRASPER directory.